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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002659000
- symbol?: comFA
- synonym:
- description?: comf operon protein 1
- comf operon protein 1
- ComF operon protein 1-like DNA/RNA helicase, putative
- DEAD/DEAH box helicase
- putative comf operon protein 1
- comf operon protein 1, putative
- ComF operon protein A, DNA transporter ATPase
- helicase domain-containing protein
- helicase domain protein
- late competence operon protein FA
- putative helicase
- superfamily II DNA/RNA helicase ComFA
- type III restriction enzyme, res subunit
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3155963..3157045
- synteny block?: BlockID0018940
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0728 (comF)
08BA02176:
C248_0837
11819-97:
MS7_0800
6850:
RSAU_000725 (comFA)
71193:
ST398NM01_0826
ECT-R 2:
ECTR2_700
ED133:
SAOV_0787
ED98:
SAAV_0712
HO 5096 0412:
SAEMRSA15_06760
JH1:
SaurJH1_0791
JH9:
SaurJH9_0774
JKD6008:
SAA6008_00765
JKD6159:
SAA6159_00705
LGA251:
SARLGA251_06830
M013:
M013TW_0737
MRSA252:
SAR0804
MSHR1132:
SAMSHR1132_06950
MSSA476:
SAS0715
Mu3:
SAHV_0747
Mu50:
SAV0750
MW2:
MW0712
RF122:
SAB0702 (comFA)
ST398:
SAPIG0826
T0131:
SAT0131_00822
TCH60:
HMPREF0772_12432
TW20:
SATW20_08250
USA300_TCH1516:
USA300HOU_0777
VC40:
SAVC_03385
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTE
N315 ------------------------------------------------------------
NCTC8325 ------------------------------------------------MLYAVTGAGKTE
Newman MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTE
USA300_FPR3757 MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTE
COL MMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVC
N315 MMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVC
NCTC8325 MMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVC
Newman MMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVC
USA300_FPR3757 MMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVC
********** ************************************** **********
COL TVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEI
N315 TVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEI
NCTC8325 TVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEI
Newman TVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEI
USA300_FPR3757 TVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEI
*****************************.******************************
COL PHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
N315 PHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
NCTC8325 PHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
Newman PHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
USA300_FPR3757 PHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
*****************************:******************************
COL IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID
N315 IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID
NCTC8325 IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID
Newman IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID
USA300_FPR3757 IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVID
************************************************************
COL AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
N315 AHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
NCTC8325 AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
Newman AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
USA300_FPR3757 AHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
***********************:************************************