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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS11020 [old locus tag: SA1916 ]
  • pan locus tag?: SAUPAN005405000
  • symbol: SA_RS11020
  • pan gene symbol?: —
  • synonym:
  • product: TIGR01440 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS11020 [old locus tag: SA1916 ]
  • symbol: SA_RS11020
  • product: TIGR01440 family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2165315..2165839
  • length: 525
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2165315..2165839) NCBI
  • BioCyc: SA_RS11020 BioCyc
  • MicrobesOnline: see SA1916

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGAAAGATTTGACAATGTTATTAGACGAATTAAAAGATATGTCCTTTTTTAATAAAGGA
    GATATATGTTTAATTGGATGTTCAACATCGGAAGTCATTGGCGAAAAAATAGGGACTGTC
    GGTTCGATGGAAGTTGCAGAAACTATTTTTAATGCATTAGATGTTGTGAGTAAAGAGACA
    GGCGTTACTTTTGCTTTTCAAGGATGTGAACATATCAACAGAGCGATAACAATAGAAAAA
    TCTCAGTATAATCCATTAACAATGGAAGAAGTTTCCGTCGTTCCAGATGTACATGCTGGA
    GGGAGTTTGGCAACATACGCTTTTCAGCATATGAAGGATCCGATCGTGGTCGAACATATT
    ACTGTTCCTTGTGGAATTGATATTGGTCAAACATTAATAGGCATGCATATTAAACATGTA
    TGTGTACCTGTAAGGACCTCAGTAAAGCAAGTAGGACAGGCAATTGTAACTATTGCCACA
    TCTAGGCCGAAAAAGATTGGTGGCGAACGTGCTAAATACAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    525

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS11020 [old locus tag: SA1916 ]
  • symbol: SA_RS11020
  • description: TIGR01440 family protein
  • length: 174
  • theoretical pI: 6.50267
  • theoretical MW: 18894.9
  • GRAVY: 0.120115

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved TIGR01440 family protein (TIGR01440; HMM-score: 304.2)
  • TheSEED: see SA1916
  • PFAM:
    Antibiotic_NAT (CL0627) DUF436; Protein of unknown function (DUF436) (PF04260; HMM-score: 239.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.044451
    • TAT(Tat/SPI): 0.000783
    • LIPO(Sec/SPII): 0.023629
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKDLTMLLDELKDMSFFNKGDICLIGCSTSEVIGEKIGTVGSMEVAETIFNALDVVSKETGVTFAFQGCEHINRAITIEKSQYNPLTMEEVSVVPDVHAGGSLATYAFQHMKDPIVVEHITVPCGIDIGQTLIGMHIKHVCVPVRTSVKQVGQAIVTIATSRPKKIGGERAKYK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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