From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS08770 [old locus tag: SA1555 ]
  • pan locus tag?: SAUPAN004398000
  • symbol: SA_RS08770
  • pan gene symbol?: acuA
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS08770 [old locus tag: SA1555 ]
  • symbol: SA_RS08770
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1782270..1782902
  • length: 633
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1782270..1782902) NCBI
  • BioCyc: SA_RS08770 BioCyc
  • MicrobesOnline: see SA1555

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGAATCATTTAAAGACGTATCAATCCGAAGATTATTACATTCATGACAAGCAATTTGTT
    ATTGAAGGTCCTTTAACATACGAAGATTTGAAAGCGCTTACTTTCGATGCGCATTTAACC
    GCATTTAGAGATGCTGAAGATCAGTATGAAGCTTTGTTAGAAATTACAACATTACCAGAA
    GGTAGAATTTATGTTGCTCGCCAAGATGAACTCATTGTGGGTTATGTCACTTTCCACTAT
    CCTGATGAAATTGAGCGCTGGTCTACAGGTAACCTTCCATATTTAATCGAATTGGGGGCA
    ATTGAAGTCAGCATCAATTTTAGGCAATTACATCTTGCAGAAAAGCTAATACAACTTAGC
    CTTTCTACACCAGAATTCGAGGATTATATCGTTATAACTACTGAATATTACTGGCATTGG
    GATTTAAAAAATTCAAAGTTAGATGTATTTGACTATAAAAAATTAATGCAGCGGTTAATG
    GCAACTGGTGGACTTGAAATATTCGCTACAGATGATCCAGAAATAACAAGTCATCCAGCT
    AATTGTTTAATGGCAAGAATTGGCAAAAATATTACATTAGAACAGCAACAAGCGTTTGAT
    GATATTCGTTATATGAATCGGTTTTTCTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    633


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS08770 [old locus tag: SA1555 ]
  • symbol: SA_RS08770
  • description: hypothetical protein
  • length: 210
  • theoretical pI: 4.41603
  • theoretical MW: 24799.9
  • GRAVY: -0.310952

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA1555
  • PFAM:
    Acetyltrans (CL0257) Acetyltransf_1; Acetyltransferase (GNAT) family (PF00583; HMM-score: 20.4)
    and 1 more
    Acetyltransf_7; Acetyltransferase (GNAT) domain (PF13508; HMM-score: 14.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9652
    • Cytoplasmic Membrane Score: 0.001
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0336
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001665
    • TAT(Tat/SPI): 0.000409
    • LIPO(Sec/SPII): 0.000202
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNHLKTYQSEDYYIHDKQFVIEGPLTYEDLKALTFDAHLTAFRDAEDQYEALLEITTLPEGRIYVARQDELIVGYVTFHYPDEIERWSTGNLPYLIELGAIEVSINFRQLHLAEKLIQLSLSTPEFEDYIVITTEYYWHWDLKNSKLDVFDYKKLMQRLMATGGLEIFATDDPEITSHPANCLMARIGKNITLEQQQAFDDIRYMNRFFF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA, CodY see SA1555

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA_RS08770&oldid=148673"