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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS07035 [old locus tag: SA1239 ]
  • pan locus tag?: SAUPAN003825000
  • symbol: SA_RS07035
  • pan gene symbol?: brnQ3
  • synonym:
  • product: branched-chain amino acid transport system II carrier protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS07035 [old locus tag: SA1239 ]
  • symbol: SA_RS07035
  • product: branched-chain amino acid transport system II carrier protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1411832..1413175
  • length: 1344
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1411832..1413175) NCBI
  • BioCyc: SA_RS07035 BioCyc
  • MicrobesOnline: see SA1239

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAATAAAAATACATGGGTCATTGGGTTTACGCTCTTCGCTATGTTTTTTGGCGCAGGC
    AATCTAATTTTTCCTCCTAATCTCGGATTGGATAGTGGTCAATTTTTCTGGCCCGCCATT
    TTAGCGTTTGTTCTAACTGGGATTGGTTTACCATTATTAGGTGTGATTGTAGGTGCACTT
    GATAAAGAAGGATATATTGGCGCATTAAATAAAATTTCACCTAAATTTTCAATATTGTTC
    TTAATCATCATTTATTTGACTATAGGACCACTTTTCGCAATACCTAGAACTGCATCTACA
    TCTTTTGAAATGACAATTACACCAATTATACATAGCAATAGTAGTATCGCTTTATTTATA
    TTTACGATTATCTACTTCATAGTCGTTTTGTATATTTGTTTAAATCCATCTAAGTTAATC
    GATCGTATTGGTTCATTATTAACACCATTATTATTGATTACTATTTTAGCGATGATTATT
    AAAGGATACTTAGACTTTAGCGGTAATAGTGCTGGAAAGGGCAATGAAGCACTATATCAT
    TCTAATTTTTCAAGTTTTGCTGAAGGCTTTACACAAGGCTATTTAACAATGGATGCCATT
    GCAGCAATTGCTTTTTCAATGATTGTTGTTAATGCAGTAAAACTAACAGGCATTACTAAA
    ACAAATCAAATATTCAAACAAACTTTGACTGCTGGTTTAATTGCAGCCGTAGCTTTAATT
    TTCATATATATTTCATTAGGTTATATTGGTAATCATATGCCAGTAAGTGACATGACGTTA
    GATCAATTGAAATCCAAAGATCGAAACATTGGGACATATTTATTAACGACAATGGCTTCA
    ACAGGATTTGGTTCATTCGGAAAATATTTATTGGGCATCATTGTGGCGCTGGCATGTCTA
    ACTACAGCATGCGGGCTTATTGTTGCAGTTTCTGAATATTTCCATAGAATCGTACCTAAA
    GTATCATACAAAGCATTTGTATTAGTTTTCATTTTAATGAGTTTTATTATTGCTAACCAA
    GGTTTAAATGCTGTTATCTCAATGTCAATTCCGGTATTAAGCATTGTATACCCAGTAGCA
    ATAACTGTTGTATTATTAATTTTAATTGCCAAATTCATACCGACAAAACGCATTTCACAA
    CAAATTCCAGTTATTATCGTATTTATATTGTCGATTTTCAGTGTTATTAGTAAGTTAGGT
    TGGCTGAAAATTAACTTTATAGAATCATTGCCTCTAAGAGCGTATTCTTTAGAGTGGTTC
    CCAGTAGCAATTATTGCAACGATATTAGGCTATCTAGTCGGCATATTTGTAAAACAAGAT
    CCAATTAAATATCAACAGGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1344

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS07035 [old locus tag: SA1239 ]
  • symbol: SA_RS07035
  • description: branched-chain amino acid transport system II carrier protein
  • length: 447
  • theoretical pI: 9.68796
  • theoretical MW: 48814.2
  • GRAVY: 0.975839

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Amino acids, peptides and amines branched-chain amino acid transport system II carrier protein (TIGR00796; HMM-score: 520.7)
  • TheSEED: see SA1239
  • PFAM:
    APC (CL0062) Branch_AA_trans; Branched-chain amino acid transport protein (PF05525; HMM-score: 453.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9997
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0003
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.048743
    • TAT(Tat/SPI): 0.00078
    • LIPO(Sec/SPII): 0.12828
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKNTWVIGFTLFAMFFGAGNLIFPPNLGLDSGQFFWPAILAFVLTGIGLPLLGVIVGALDKEGYIGALNKISPKFSILFLIIIYLTIGPLFAIPRTASTSFEMTITPIIHSNSSIALFIFTIIYFIVVLYICLNPSKLIDRIGSLLTPLLLITILAMIIKGYLDFSGNSAGKGNEALYHSNFSSFAEGFTQGYLTMDAIAAIAFSMIVVNAVKLTGITKTNQIFKQTLTAGLIAAVALIFIYISLGYIGNHMPVSDMTLDQLKSKDRNIGTYLLTTMASTGFGSFGKYLLGIIVALACLTTACGLIVAVSEYFHRIVPKVSYKAFVLVFILMSFIIANQGLNAVISMSIPVLSIVYPVAITVVLLILIAKFIPTKRISQQIPVIIVFILSIFSVISKLGWLKINFIESLPLRAYSLEWFPVAIIATILGYLVGIFVKQDPIKYQQE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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