From AureoWiki

Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus N315

locus tag: SA_RS05680 [old locus tag: SA1001 ]

pan locus tag^?: SAUPAN003398000

symbol: SA_RS05680

pan gene symbol^?: flr

synonym:
product: FPRL1 inhibitory protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: SA_RS05680 [old locus tag: SA1001 ]
symbol: SA_RS05680
product: FPRL1 inhibitory protein
replicon: chromosome
strand: -
coordinates: 1133925..1134326
length: 402
essential: no DEG other strains

⊟Accession numbers[edit | edit source]

Location: NC_002745 (1133925..1134326) NCBI
BioCyc: SA_RS05680 BioCyc
MicrobesOnline: see SA1001

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
61
121
181
241
301
361
ATGAAAAAAAATATCACAAAAACTATTATCGCATCTACAGTAATCGCTGCAGGTCTTTTA
ACTCAAACTAATGATGCTAAAGCTTTCTTTAGTTATGAATGGAAAGGTTTAGAAATCGCA
AAAAATTTAGCAGATCAAGCTAAAAAGGACGATGAACGTATTGATAAGTTAATGAAAGAG
TCTGATAAAAATCTAACTCCTTACAAAGCTGAAACTGTTAATGATCTGTACCTTATTGTT
AAAAAATTAAGCCAAGGTGATGTGAAGAAAGCAGTTGTCAGAATTAAAGATGGTGGTCCT
AGAGATTACTATACTTTTGACTTAACTCGTCCTTTAGAAGAGAACAGAAAAAATATTAAA
GTTGTTAAAAACGGTGAAATCGACTCGATTTATTGGGATTAA
60
120
180
240
300
360
402

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: SA_RS05680 [old locus tag: SA1001 ]
symbol: SA_RS05680
description: FPRL1 inhibitory protein
length: 133
theoretical pI: 9.68102
theoretical MW: 15216.4
GRAVY: -0.635338

⊟Function[edit | edit source]

TIGRFAM:
TheSEED: see SA1001
⊞PFAM:
no clan defined FPRL1_inhibitor; Formyl peptide receptor-like 1 inhibitory protein (PF16104; HMM-score: 230.3)
and 1 more
Ubiquitin (CL0072) CHIPS; Chemotaxis-inhibiting protein CHIPS (PF11434; HMM-score: 14.9)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

⊞
PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helices: 0
⊞
DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0001
- Cytoplasmic Membrane Score: 0.0011
- Cell wall & surface Score: 0.0032
- Extracellular Score: 0.9956
LocateP:
⊞
SignalP: Signal peptide SP(Sec/SPI) length 28 aa
- SP(Sec/SPI): 0.959873
- TAT(Tat/SPI): 0.002874
- LIPO(Sec/SPII): 0.006357
- Cleavage Site: CS pos: 28-29. AKA-FF. Pr: 0.8854
predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

GI: 446662218 NCBI
RefSeq: WP_000739564 NCBI
UniProt: see SA1001

⊟Protein sequence[edit | edit source]

MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL, NCTC8325
protein localization: data available for COL
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator:

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊞Biological Material[edit | edit source]

⊞Other Information[edit | edit source]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SA_RS05680&oldid=98465"