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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS05490 [old locus tag: SA0969 ]
  • pan locus tag?: SAUPAN003348000
  • symbol: SA_RS05490
  • pan gene symbol?: —
  • synonym:
  • product: glycerophosphodiester phosphodiesterase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS05490 [old locus tag: SA0969 ]
  • symbol: SA_RS05490
  • product: glycerophosphodiester phosphodiesterase
  • replicon: chromosome
  • strand: -
  • coordinates: 1099459..1100385
  • length: 927
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1099459..1100385) NCBI
  • BioCyc: SA_RS05490 BioCyc
  • MicrobesOnline: see SA0969

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAAAAAAGTAAACAGAAACATTTTAAATGCGGTACTAGTCGGTGCTGGATTTTTAAGT
    AGTCTATTAATGATCAATAAAAATAAAGTGATTACTAAAAAGCAAACCATCCCTGCTTTT
    TTCAAAGGCAATGCACCATATATATTTGCGCATCGCGGTGGTATGGCTTTAAGACCAGAG
    CAAACGCAACTTGCATTTGACTATGCTAAACAATTAGGCGTTGATGGCTTTGAAACAGAT
    GTGAGACTCACAAAAGATCAACAGCTTATCGTTTTTCATGACGCAACTGTTGATAGAACG
    ACGAACGGCTCTGGAAAAGTTAGTGCCCACACATTAGCAGAATTAAAGAAATTAGACGCA
    GCTTATCACTTCAAAGATATCAATGGACTAACACCATATCGTGGTCATGCACACACAACT
    ATACTAACCTTCGATGAGTTGCTGAAGCAATATCCTGATATGTATATAAACGTAGACTTA
    AAAGATGCTCCTGAATCCTATGAAGGCTCAATCGCACCACAAATTATGTTTGATACAATT
    GCAGAAAATCAAGCATTTGACCGCGTTCTTGTGACAAGTTTTTATAAAGAACAAATCGTT
    CGTTTTAATAAAATTGCACAAGGATCCGTCGCAATTGGTGCTAGCCAACAGGAAGTTACA
    GAAGCATTTTTAAAATATCATTTATTAGGTGGTAGGTACTACCAACCATTAGCACAAACG
    TTCCAAATGCCTACTCATTTTAAAGGCATTGATTTGACTTCATCTCGTTTTATCAAATGG
    TTAAATGATATGAATATCATTCCAGGCTATTATGGCGTAAATAGTATAGATCTGATGAAT
    GATTTATACCAAAAAGGTGCACACACGATTGTGACAGATCGACCAGATTTAGCACAACAA
    TTCAAACAAACAATCCCGAATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    927


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS05490 [old locus tag: SA0969 ]
  • symbol: SA_RS05490
  • description: glycerophosphodiester phosphodiesterase
  • length: 308
  • theoretical pI: 9.38952
  • theoretical MW: 34764.6
  • GRAVY: -0.269156

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0969
  • PFAM:
    TIM_barrel (CL0036) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 105.1)
    and 1 more
    no clan defined DUF5890; Family of unknown function (DUF5890) (PF19240; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0501
    • Cytoplasmic Membrane Score: 0.8222
    • Cell wall & surface Score: 0.0036
    • Extracellular Score: 0.1241
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.281589
    • TAT(Tat/SPI): 0.011865
    • LIPO(Sec/SPII): 0.095252
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKVNRNILNAVLVGAGFLSSLLMINKNKVITKKQTIPAFFKGNAPYIFAHRGGMALRPEQTQLAFDYAKQLGVDGFETDVRLTKDQQLIVFHDATVDRTTNGSGKVSAHTLAELKKLDAAYHFKDINGLTPYRGHAHTTILTFDELLKQYPDMYINVDLKDAPESYEGSIAPQIMFDTIAENQAFDRVLVTSFYKEQIVRFNKIAQGSVAIGASQQEVTEAFLKYHLLGGRYYQPLAQTFQMPTHFKGIDLTSSRFIKWLNDMNIIPGYYGVNSIDLMNDLYQKGAHTIVTDRPDLAQQFKQTIPNK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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