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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS04860 [old locus tag: SA0858 ]
  • pan locus tag?: SAUPAN003170000
  • symbol: SA_RS04860
  • pan gene symbol?: trfB
  • synonym:
  • product: competence protein CoiA

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS04860 [old locus tag: SA0858 ]
  • symbol: SA_RS04860
  • product: competence protein CoiA
  • replicon: chromosome
  • strand: +
  • coordinates: 972441..973427
  • length: 987
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (972441..973427) NCBI
  • BioCyc: SA_RS04860 BioCyc
  • MicrobesOnline: see SA0858

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAG
    ACACAATATTTTTGTCCTGTGTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTA
    ATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAATGTTTTAATAATGAAACGATT
    AAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
    GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAA
    TATGTTATTGAGCTACAGTATTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAA
    GGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAAATGATGTTGATTATTGTCAT
    AATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
    CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGC
    GGGCACAAATATGTCGCTGAAAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCG
    CCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCGCAATTAATCAATATATCAAA
    TATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
    TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATT
    GAAAATCATCCAATTGAGTGGCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGC
    AAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAAAATTTATTGTTGCTCTAGAA
    AGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
    GGTAATGACGTGCAAATTTTGTTCTAA
    60
    120
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    360
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    840
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    960
    987

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS04860 [old locus tag: SA0858 ]
  • symbol: SA_RS04860
  • description: competence protein CoiA
  • length: 328
  • theoretical pI: 9.57767
  • theoretical MW: 38878.3
  • GRAVY: -0.302439

⊟Function[edit | edit source]

  • TIGRFAM:
    acetoacetyl-CoA reductase (TIGR01829; EC 1.1.1.36; HMM-score: 14.3)
  • TheSEED: see SA0858
  • PFAM:
    PDDEXK (CL0236) CoiA; Competence protein CoiA-like family (PF06054; HMM-score: 102.1)
    and 1 more
    Zn_Beta_Ribbon (CL0167) NOB1_Zn_bind; Nin one binding (NOB1) Zn-ribbon like (PF08772; HMM-score: 13.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006438
    • TAT(Tat/SPI): 0.001641
    • LIPO(Sec/SPII): 0.003812
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKVEIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKLHTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQLTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDRGNDVQILF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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