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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS01000 [old locus tag: SA0165 ]
  • pan locus tag?: SAUPAN001009000
  • symbol: SA_RS01000
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS01000 [old locus tag: SA0165 ]
  • symbol: SA_RS01000
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 188955..189467
  • length: 513
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (188955..189467) NCBI
  • BioCyc: SA_RS01000 BioCyc
  • MicrobesOnline: see SA0165

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACATTATTTTTATTAGAAGCTAACAATCTTGATTTTGCATCAACGAAAGAAGAACTA
    GAAGCAAAGGCAGCATCACTATCTACGAAGACAATTCCAACATTAATTGAAGTACAAGCT
    ACTGAAAATTTAACTCATGGTTATTTTATTGTGGAAGCAAATGACGAAGCAGAAGCTAAA
    CAATTTTTAACAGAAGCAGATATTAGTATTCAATTAGTCAAAGAAGTACGCTTAGTTGGT
    AAAGATTTAGATGAAGTTAAAAATGGTGATGCACATGTTGATTACCTTGTAACTTGGAAC
    ATTCCGGAAGGCATTACGATGGATCAATATTTAGCACGTAAAAAGAAAAATTCTGTTCAT
    TATGAAGAAGTGCCAGAAGTTGAATTTAAACGCACATATGTATGTGAAGATATGTCTAAA
    TGTATTTGTTTATACAACGCACCTGATGAAGAAGCGGTACGTCGCGCGCGAAAAGCAGTT
    GATACACCGATTGATGGCATCGAAAAACTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    513

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS01000 [old locus tag: SA0165 ]
  • symbol: SA_RS01000
  • description: hypothetical protein
  • length: 170
  • theoretical pI: 4.40041
  • theoretical MW: 19256.7
  • GRAVY: -0.352941

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0165
  • PFAM:
    Dim_A_B_barrel (CL0032) DUF4242; Protein of unknown function (DUF4242) (PF14026; HMM-score: 84.3)
    and 1 more
    NTF2 (CL0051) MecA_N; NTF2-like N-terminal transpeptidase domain (PF05223; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005292
    • TAT(Tat/SPI): 0.000623
    • LIPO(Sec/SPII): 0.000692
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY, CymR* see SA0165

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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