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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS13610 [old locus tag: SAUSA300_2454 ]
  • pan locus tag?: SAUPAN006151000
  • symbol: SAUSA300_RS13610
  • pan gene symbol?: —
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS13610 [old locus tag: SAUSA300_2454 ]
  • symbol: SAUSA300_RS13610
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 2650141..2650911
  • length: 771
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGGGAACTTTAATTAAACAAGAATGTTTCAAATTATTTAAAAAGAAATCAACTTTTATC
    GCACCTATTGTCTTTATTCTACTAATGGTTGCTCAAGGTTATATTGCTACAAAATACAAT
    GAAATTTTTACGCCACAGGAATCTTTCACATCTGCTTATAATGGTTTTTCATGGTTTGCA
    TTTTTATTAATTATTCAAGCAAGTACAATCATTTCAATGGAATTTCATTACGGTACGATT
    AAAAATTTACTCTATCGTGAATATTCAAGAACAACTATGATTGTTAGCAAAATCATCACA
    TTATTTATTATTTCTTTAATTTATTTTGTTATTACAATTATTGCTTCAATTGTTATTGGG
    TCTTTATTCTTTAATGATTTAAATATATTTGAAAGTAGCGGTAATCAATTATCTTTATTG
    AATCAATTATTATTAGTTAGTTTAGGCACATTTGTTGGCGTTTGGTTAGTTTTAAGCTTA
    ACGTTGCTATTATCATCTGCAACAAATTCAACGGGAGTAGCCATTGCTGTAGGTATTGTT
    TTTTATTTTGCAAGTTCTATTTTAGCAGTTATTCAAACGGCACTTTTAGAAAAAATAGAC
    TGGCTAAAGTGGAATCCTATTAATATGATGAATATTATGCTTCAAACAGTTGAAAAAGGC
    TTTAGTAAGTCGACAAAATTAGAACTTCATGAATTGTTTATTGGTAATATTGCTTATATT
    TCTATTTTCTTAATACTTGTAGTATTTATTTTCAAGAAGAAAAATATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    771

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS13610 [old locus tag: SAUSA300_2454 ]
  • symbol: SAUSA300_RS13610
  • description: ABC transporter permease
  • length: 256
  • theoretical pI: 9.75381
  • theoretical MW: 28919.4
  • GRAVY: 0.867578

⊟Function[edit | edit source]

  • TIGRFAM:
    lantibiotic protection ABC transporter permease subunit, MutG family (TIGR03733; HMM-score: 24.9)
  • TheSEED: see SAUSA300_2454
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_4; ABC-2 family transporter protein (PF12730; HMM-score: 62.2)
    and 4 more
    ABC2_membrane_2; ABC-2 family transporter protein (PF12679; HMM-score: 38.2)
    ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 24.2)
    no clan defined DUF3270; Protein of unknown function (DUF3270) (PF11674; HMM-score: 13.3)
    DUF6220; Family of unknown function (DUF6220) (PF19728; HMM-score: 10.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9781
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0217
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.115752
    • TAT(Tat/SPI): 0.000853
    • LIPO(Sec/SPII): 0.082045
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGTLIKQECFKLFKKKSTFIAPIVFILLMVAQGYIATKYNEIFTPQESFTSAYNGFSWFAFLLIIQASTIISMEFHYGTIKNLLYREYSRTTMIVSKIITLFIISLIYFVITIIASIVIGSLFFNDLNIFESSGNQLSLLNQLLLVSLGTFVGVWLVLSLTLLLSSATNSTGVAIAVGIVFYFASSILAVIQTALLEKIDWLKWNPINMMNIMLQTVEKGFSKSTKLELHELFIGNIAYISIFLILVVFIFKKKNI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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