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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS13575 [old locus tag: SAUSA300_2448 ]
  • pan locus tag?: SAUPAN006139000
  • symbol: SAUSA300_RS13575
  • pan gene symbol?: —
  • synonym:
  • product: FUSC family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS13575 [old locus tag: SAUSA300_2448 ]
  • symbol: SAUSA300_RS13575
  • product: FUSC family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2642563..2644386
  • length: 1824
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGATTATTCCTGCAATAATCGGTTACTTATGTGGTAATTTCCAATTTGGATTATTAGTT
    GCAACCGGAACACTAGCCCATATTTATGTTTTTAAAGGTCCGTCGCGATCTAAGCTGCGA
    ACTGTAATAATTTGTAATTTAGCGTTTGCAATATGTATGATGCTTGGTACGCTAACAGCC
    AAAACGCCACTCGTTTTTGGAATGACATTATTAATTGTTACGGTTATACCATTTTATATA
    TTTACTGCCTTAAAAATAGCTGGACCGTCATCGACATTCTTCATTGTGACATTCAGTCTA
    CCCATTAACTTACCTATAGCTCCCGAAGAAGCATTATATAGAGGCTTTGCGATTTTAGTA
    GGCGGTATACTTGCCACTATGATGGTGTTAATCACGATCGTATTTTCTAAAAACAAAGCT
    GAAGAACAAGCAATTCAAAATGATTTTAAACTCATATCTAAGTTGTTACACACTTATAAT
    GATAAATCTGCTTTTTTACAAGTAGCAAAAACAGCGGTGGATAGTTTTAAAGCATCTGAT
    AAATTATTAATCACTTCTACTTCAAGTAACGATAAATTAAGTAGACGTTTCCAAAAATTA
    TTATTATTACACACATCTGCCCAAGGGATTTATTCTGAACTGTTAGAGTTGAACGCTAAA
    CAAATTCGACCATTGCCAGATGAGTTAATTGAAATGATGGATCATATCATTGCACAACTA
    GATAATAGTGAGGAAAATGTAAGATATTGGCGAAAAGAAGTGACAGTAACAGAGGAATTT
    CAAAATTTATTCAACCATATATTGAAAATTGATGAAATGGTGCATGCAAATGAAGCGCGT
    ATTGCGTATGAAGCAGACATGCGAAAACCTTTATATAGTAAACGCATTTATCAAAATTTA
    ACATTAGACTCTATTGTTTTTAGAAATACATTGAGATATACAGCGATTATGATGATAGCG
    ATATTTATTGCGTTAATGTTTGATTTTGAAAAAGCATACTGGATACCGTTATCTGCACAT
    ACAATATTACTAGGAACATCAACTATACATGCAATCGAGAGAGGTATGGCACGAGGTTTA
    GGTACTATTTTAGGTGTGTTAGTACTTTCAGTCATATTGTTGTTTTCAATACCAACACCT
    GTTGCAGTAATTTTAATGGGCATTGCAGCATTGTTTACTGAAGCATTGGTGGGAGCAAAT
    TATGCGATTGCAGTAGTTTTTATTACAATACAAGTTATTTTAATGAACGGATTAGCATCA
    CAGAATTTAACAATTAACATTGCGTTTCCAAGAGTTATTGACGTTGCAATGGGTATTGTG
    ATTGCAATCATAGGTTTATTTGTCCTTGGACAACGTACCGCATCCGCATTGCTTCCTAAT
    GTAATGGCTGAAGTTGTTCGTAAAGAAGCAACGCTCTTTCATTATTTATTTTCTGAAAAT
    CAATATAAAGATGATGTGTATCAGAAAAACACGGCTATGAACCTATCTGTGAAATTAAAT
    AACATGACGCAAGTTTATAATGCAGCTAATGGTGAATTATTTAGTGATAAGACATTGATT
    CAAAATTATTATCCTAGCTTATTCGCATTAGAAGAAATTAGCTTTATGTTAAATAGAGCC
    ATGGCTAATGAAGATAGACTTACAATAAATGAACAATTAATGGGCGAGTATTTAGCAATA
    TTTGAAAACATCGCTAAGCATTTCGAATTAAATACAGAATTAGAAATAAAGATATTACCA
    GATTTACCACAGTATAATTATATTCAATCAGCAATGATGAATATTCAACACAATGGTTTT
    CGTGAGAGAGACAAGAACGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1824

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS13575 [old locus tag: SAUSA300_2448 ]
  • symbol: SAUSA300_RS13575
  • description: FUSC family protein
  • length: 607
  • theoretical pI: 7.1178
  • theoretical MW: 68200.9
  • GRAVY: 0.400824

⊟Function[edit | edit source]

  • TIGRFAM:
    integral membrane protein, YccS/YhfK family (TIGR01667; HMM-score: 76.7)
    Cell structure Cell envelope Other TIGR01666 family membrane protein (TIGR01666; HMM-score: 64.1)
  • TheSEED: see SAUSA300_2448
  • PFAM:
    FUSC (CL0307) FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 78.9)
    and 5 more
    FUSC; Fusaric acid resistance protein family (PF04632; HMM-score: 26.3)
    no clan defined DUF5665; Domain of unknown function (DUF5665) (PF18910; HMM-score: 17.3)
    TPR (CL0020) HEAT_DAAF5; Dynein axonemal assembly factor 5, HEAT-repeat domain (PF24573; HMM-score: 12.7)
    no clan defined YicC-like_N; Endoribonuclease YicC-like, N-terminal region (PF03755; HMM-score: 12.2)
    DUF412; Protein of unknown function, DUF412 (PF04217; HMM-score: 7.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0001
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017377
    • TAT(Tat/SPI): 0.000728
    • LIPO(Sec/SPII): 0.02095
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKSAFLQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSEENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPNVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLAIFENIAKHFELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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