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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2299 [new locus tag: SA_RS13180 ]
  • pan locus tag?: SAUPAN006139000
  • symbol: SA2299
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA2299 [new locus tag: SA_RS13180 ]
  • symbol: SA2299
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2581766..2583589
  • length: 1824
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    ATGATTATTCCTGCAATAATCGGTTACTTATGTGGTAATTTCCAATTTGGATTATTAGTT
    GCAACCGGAACACTAGCCCATATTTATGTTTTTAAAGGTCCGTCGCGATCTAAGCTGCGA
    ACTGTAATAATTTGTAATTTAGCGTTTGCAATATGTATGATGCTTGGTACGCTAACAGCC
    AAAACGCCACTCGTTTTTGGAATGACATTATTAATTGTTACGGTTATACCATTTTATATA
    TTTACTGCCTTAAAAATAGCTGGACCGTCATCGACATTCTTCATTGTGACATTCAGTCTA
    CCCATTAACTTACCTATAGCTCCCGAAGAAGCATTATATAGAGGCTTTGCGATTTTAGTA
    GGCGGTATACTTGCCACTATGATGGTGTTAATCACGATCGTATTTTCTAAAAACAAAGCT
    GAAGAACAAGCAATTCAAAATGATTTTAAACTCATATCTAAGTTGTTACACACTTATAAT
    GATAAAGCTGCTTTTTTACAAGTAGCAAAAACAGCGGTGGATAGTTTTAAAGCATCTGAT
    AAATTATTAATCACTTCTACTTCAAGTAACGATAAATTAAGTAGACGTTTCCAAAAATTA
    TTATTATTACACACATCTGCCCAAGGGATTTATTCTGAACTGTTAGAGTTGAACGCTAAA
    CAAATTCGACCATTGCCAGATGAGTTAATTGAAATGATGGATCATATCATTGCACAACTA
    GATAATAGTGATGAAAATGTAAGATATTGGCGAAAAGAAGTGACAGTAACAGAGGAATTT
    CAAAATTTATTCAACCATATATTGAAAATTGATGAAATGGTGCATGCAAATGAAGCGCGT
    ATTGCGTATGAAGCAGACATGCGAAAACCTTTATATAGTAAACGCATTTATCAAAATTTA
    ACATTAGACTCTATTGTTTTTAGAAATACATTGAGATATACAGCGATTATGATGATAGCG
    ATATTTATTGCGTTAATGTTTGATTTTGAAAAAGCATACTGGATACCGTTATCTGCACAT
    ACAATATTACTAGGAACATCAACTATACATGCAATCGAGAGAGGTATGGCACGAGGTTTA
    GGTACTATTTTAGGTGTGTTAGTACTTTCAGTCATATTGTTGTTTTCAATACCAACACCT
    GTTGCAGTAATTTTAATGGGCATTGCAGCATTGTTTACTGAAGCATTGGTGGGAGCAAAT
    TATGCGATTGCAGTAGTTTTTATTACAATACAAGTTATTTTAATGAATGGATTAGCATCA
    CAGAATTTAACAATTAACATTGCGTTTCCAAGAGTTATTGACGTTGCAATAGGTATTGTG
    ATTGCAATCATAGGTTTATTTGTCCTTGGACAACGTACCGCATCCGTATTGCTTCCTAAT
    GTAATGGCTGAAGTTGTTCGTAAAGAAGCAACGCTCTTCCATTATTTGTTTTCTGAAAAC
    CAATATAAAGATAATGTGTATCAGAAAAACACGGCCATGAACCTATCTGTGAAATTAAAT
    AACATGACGCAAGTTTATAATGCAGCTAATGGTGAATTATTTAGTGATAAGACATTGATT
    CAAAATTATTATCCTAGCTTATTCGCATTAGAAGAAATTAGCTTTATGTTAAATAGAGCC
    ATGGCTAATGAAGATAGACTTACAATAAATGAACAATTAATGGGCGAGTATTTAGCAACA
    TTTGAAAACATCGCTAAGCATTTAGAATTAAATACAGAATTAGAAATAAAGATATTACCA
    GATTTACCACAGTATAATTATATTCAATCAGCAATGATGAATATTCAACACAATGGTTTT
    CGTGAGAGAGACAAGAACGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1824

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA2299 [new locus tag: SA_RS13180 ]
  • symbol: SA2299
  • description: hypothetical protein
  • length: 607
  • theoretical pI: 7.37503
  • theoretical MW: 68133.8
  • GRAVY: 0.406425

⊟Function[edit | edit source]

  • TIGRFAM:
    integral membrane protein, YccS/YhfK family (TIGR01667; HMM-score: 79.1)
    and 1 more
    Cell structure Cell envelope Other TIGR01666 family membrane protein (TIGR01666; HMM-score: 62.8)
  • TheSEED  :
    • Uncharacterized membrane protein YvaC
  • PFAM:
    FUSC (CL0307) FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 80.8)
    and 4 more
    FUSC; Fusaric acid resistance protein family (PF04632; HMM-score: 27.7)
    no clan defined DUF5665; Domain of unknown function (DUF5665) (PF18910; HMM-score: 17.3)
    YicC-like_N; Endoribonuclease YicC-like, N-terminal region (PF03755; HMM-score: 12)
    DUF412; Protein of unknown function, DUF412 (PF04217; HMM-score: 7.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9998
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0001
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017377
    • TAT(Tat/SPI): 0.000728
    • LIPO(Sec/SPII): 0.02095
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKAAFLQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSDENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAIGIVIAIIGLFVLGQRTASVLLPNVMAEVVRKEATLFHYLFSENQYKDNVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHLELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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