PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS11170 [old locus tag: SAUSA300_2030 ]
• pan locus tag^?: SAUPAN005344000
• symbol: SAUSA300_RS11170
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS11170 [old locus tag: SAUSA300_2030 ]
• symbol: SAUSA300_RS11170
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2190687..2192270
• length: 1584
• essential: unknown other strains

⊟Accession numbers

• Location: NC_007793 (2190687..2192270) NCBI
• BioCyc: SAUSA300_RS11170 BioCyc
• MicrobesOnline: see SAUSA300_2030

⊟Phenotype

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⊟DNA sequence

• 1
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  1021
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  1141
  1201
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  1321
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  1441
  1501
  1561
  
  ATGTCTGAACCTCAAAAATTACATCCGATTTCATATTTTAATGGCATAATCAATGCTATC
  AAACAAAACATAGTCGTCTTTTTTATTTTCATTATCTTTCAATTGAAAGATTTTGATTAT
  ACGAATCCCGAATCATATTTATGGATAGGTATTGTATTTGTATTCTTTTTAATATCATAC
  ATTTCTCAAATTGTCGGAATTATGAACACGCGATATTGGATTGAGGATAATTATTTCATT
  TTAACAACAGGTATTTTTAATAAAAAGCGTAAAGAATTAAATATAAAACGTATTCAGTCC
  GTTGATATGACACAAGGGGTCGTCAATCAAATTATTGGTGGTGTGGATTTACAAATCAAA
  ACACCAAGTGATGGTATTGTCTTAAGTGTTATTTCGAAAAAACAAGGTGAATATCTTGAA
  CGATATATTGATCAATTGCAAACAGAGTTGAAGACAGAAGTGGCGCAAAAGTCTAGTGCT
  GAGAAGAATGACAACTGTAATCATGACATTGAAGGTAATGTGGAAGACATCGCAGAAGGT
  CGCTTAGATGAAGTGCAGAACACTGATAGTATGCTTAATCAGAAAAATAAACGCATTCCT
  ATATATCAGATGAATTTTAAAGAATCACTATTTATGGCAATGACCAGTGGCGCCATTGGT
  GTAACGTTAGCAGCTTTAGTACCGATTTACGGGGCTGTAAGAGAGTTGATCCCATGGTCG
  AAGCTAAATCATGAAATTAGTCAATGGGTTCAAATTGTAAGTATTTCAGTATTAATCATC
  ATTTTACTAGTATTAATAGTGGCATATATTATTGGAACGATTATAACAATGATAAGATTT
  TATGGCTTTTCGGTGATGCTTGAAAATGAGCAACTTAAAATTGAATATGGTCTCTTTAAC
  AAGAAGAAAGTAACTGTACCAACGAAACGATTGCAAGCTGTTGTTGAACGTCAGTCATAT
  ATACGAAGATTATTTGGCTACACAGCAATACATTTTATCATCACAAGTGATTTTGAAAAT
  AAAAAAATCGAAGATGATGACAATGATTCAGGTAGTGTGCCGATATTGCCGTTTATTAAA
  CGAGACAAAGCATATCAAATTATCCAGAATTTAGTACCAGATTTATCTTATCAACAAGTT
  AATGAAGGTATGCCTTTGTCAGGTTTCCACAGACACTTTTTAATACCTAGTATTATTGTC
  ATAGCTATGGCAGGTATAGGCTGTTATTTTTGGAATCAATTATTATTGTTATTTACGATT
  ATAACAATAGTCATTATTGGTTTATTTGTGATCAAAGGATATCTTTATGTCAAACATGCG
  GGTTTTAAAATGACAGAAGAACAAATTACTATCCAGAATTTCGAGCTATTGAAACGAAAT
  ATTTATTATTTTAAAGCGCATCACATTATAGGATTTGACACTTGGCAACATACATTACTT
  AAACGCAACAATTTAAATAATTTTAGCTTTATTGTTGCTAAAGGTGTGGGAGCCCAATCG
  ATTAACTTAAAATACGCAAGAAGTGAAGATGCAAATAAATTGAAATCATGGTATTTAAGA
  GGTGAAAATGATGAGGGATTATAA
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  1260
  1320
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  1560
  1584
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS11170 [old locus tag: SAUSA300_2030 ]
• symbol: SAUSA300_RS11170
• description: hypothetical protein
• length: 527
• theoretical pI: 8.71647
• theoretical MW: 60745.3
• GRAVY: 0.0815939

⊟Function

• TIGRFAM:
• TheSEED: see SAUSA300_2030
• PFAM:
  PH (CL0266) bPH_2; Bacterial PH domain (PF03703; HMM-score: 100.3)
  and 2 more
  bPH_4; Bacterial PH domain (PF06713; HMM-score: 15.7)
  no clan defined Phage_pRha; Phage regulatory protein Rha (Phage_pRha) (PF09669; HMM-score: 13.9)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 6
• DeepLocPro: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 0.9998
  • Cell wall & surface Score: 0
  • Extracellular Score: 0.0002
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.000916
  • TAT(Tat/SPI): 0.000076
  • LIPO(Sec/SPII): 0.004484
• predicted transmembrane helices (TMHMM): 6

⊟Accession numbers

• GI: 447217370 NCBI
• RefSeq: WP_001294626 NCBI
• UniProt: see SAUSA300_2030

⊟Protein sequence

• MSEPQKLHPISYFNGIINAIKQNIVVFFIFIIFQLKDFDYTNPESYLWIGIVFVFFLISYISQIVGIMNTRYWIEDNYFILTTGIFNKKRKELNIKRIQSVDMTQGVVNQIIGGVDLQIKTPSDGIVLSVISKKQGEYLERYIDQLQTELKTEVAQKSSAEKNDNCNHDIEGNVEDIAEGRLDEVQNTDSMLNQKNKRIPIYQMNFKESLFMAMTSGAIGVTLAALVPIYGAVRELIPWSKLNHEISQWVQIVSISVLIIILLVLIVAYIIGTIITMIRFYGFSVMLENEQLKIEYGLFNKKKVTVPTKRLQAVVERQSYIRRLFGYTAIHFIITSDFENKKIEDDDNDSGSVPILPFIKRDKAYQIIQNLVPDLSYQQVNEGMPLSGFHRHFLIPSIIVIAMAGIGCYFWNQLLLLFTIITIVIIGLFVIKGYLYVKHAGFKMTEEQITIQNFELLKRNIYYFKAHHIIGFDTWQHTLLKRNNLNNFSFIVAKGVGAQSINLKYARSEDANKLKSWYLRGENDEGL

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications