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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS07080 [old locus tag: SAUSA300_1301 ]
  • pan locus tag?: SAUPAN003826000
  • symbol: SAUSA300_RS07080
  • pan gene symbol?: —
  • synonym:
  • product: nitric oxide reductase activation protein NorD

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS07080 [old locus tag: SAUSA300_1301 ]
  • symbol: SAUSA300_RS07080
  • product: nitric oxide reductase activation protein NorD
  • replicon: chromosome
  • strand: -
  • coordinates: 1431401..1433287
  • length: 1887
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGAGTGATCGTTTCATAAAATTTAATGACGAACAGTTAGATGCCAAGCAAGTAATGATG
    TTGCAAGACTTAGCTCGACTCTTATTAAAAAATGAACAAACACAAGTTAAAATCCAAAAA
    TTCCCTTACTATAATCCTGTTCAAAATGTTTTGATTACGAGTTGGTTTTGGTCACATCGA
    CCAAGCCATATCGAAATGGCTGGTTTAAAAACAGATGTTATGTTAGCTGCTTACGGTTAT
    CATATGATGGATGTACAAATTGTAAATGAAGTAGTACAAGATAAAACTTTTAAACACCCT
    AAATTTTATCAACAACTTTTTAAATTATTAGAAGATATGCGCGTATTAAATTCTATTAAA
    GTTGAGCGCCCAAGTACTGCTAAATTAATTGATCTTCGCTTAGATACACGTATATCATAT
    ACGGAATCTCAAATTAAAGTGTATCGTACTAAAACACAATATACAGATTTATTATTTTTG
    TATTTAGAACATGCATTTTTAAGCCAAGATTTCTTTGATATACCATCTATACATTCAGAT
    TTAGATGATATTTTAGTAAATATGTTCTTATATTTACCTAATTTTTTCCAAAATCAAAAT
    TCTGAAGATAATATGTATCTGGCTCAAAGAATTATGTATCAAGTAGATGATATTTTAAAA
    GAAGATATGCTAAACGAATATTATTACTTACCTAAAACACTATATAATACATTAGCTAGT
    CCAGAGTTTGATGATTTAAAGAGAACTGATGCAAGTCAAGTCGATGGGCAAGATGATACT
    TCAGAAGATGATGATAACGAAAGTGAAAAAGCTGACTCTAAATCTGCAGATAGTGAGTCA
    AAAGGTGGCGCCTATTTAGAAATGGAGCTTCACGAAGGACAAAATAGTGAAACATTAGGT
    AATGATGAAGCACGTGAAGGCGATGCTACAGATGATATGACTGATATGATGACCAAAAAG
    GGCAAAGGATCAAACGATACGCTAAATCGTGAAGAAGGCGATGCTGTTGGTCAAAGCCAA
    GCATTTCAACTTGATGGTGTGAACAAAAATGTAGAAATAAAATGGCAAATTCCTGAAATT
    GAGCCACAATATGTTTTAGAATATCAAGAATCGAAACAAGACGTACAATATGAAATCAAA
    GACTTAATTCAAATTATAAAGAAAACGATTGAACGAGAACAACGAGATGCACGTTTTAAT
    TTAACAAAAGGGCGATTACAAAAGGATTTAATTAATTGGTTTATCGACGATCAATATAAA
    TTGTTTTACAAAAAACAAGATTTAAGTAAATCATTTGATGCGACATTTACATTGTTAATT
    GATGCGTCAGCAAGTATGCATGATAAAATGGCTGAAACGAAGAAAGGTGTAGTGTTATTC
    CACGAGACGTTAAAAGCATTGAACATTAAACATGAAATTTTATCATTCAGTGAGGATGCC
    TTTGATTCAGACGAGCATGCACAACCAAATATCATTAATGAAATTATTAACTATGATTAC
    TCAACCTTTGAAAAAGATGGCCCACGTATTATGGCACTTGAACCTCAAGATGATAATCGT
    GATGGTGTTGCTATTAGAGTTGCAAGTGAACGATTAATGCGTCGAAATCAACATCAACGA
    TTTTTAATCGTATTTTCAGACGGCGAACCGTCTGCATTTAATTATAGTCAAGATGGTATT
    ATTGATACGTATGAAGCTGTAGAAATGTCACGTAAATTTGGTATTGAAGTATTTAATGTA
    TTTTTGAGTCAAGATCCAATAACTGAAGATGTTGAACAAACAATTCATAATATTTATGGT
    CAATATGCTATTTTCGTTGAAGGTGTTGCGCATTTACCTGGACATCTCTCTCCATTATTA
    AAAAAATTACTACTTAAATCTTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1887

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS07080 [old locus tag: SAUSA300_1301 ]
  • symbol: SAUSA300_RS07080
  • description: nitric oxide reductase activation protein NorD
  • length: 628
  • theoretical pI: 4.50167
  • theoretical MW: 73099.7
  • GRAVY: -0.581051

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin cobaltochelatase, CobT subunit (TIGR01651; EC 6.6.1.2; HMM-score: 21.5)
  • TheSEED: see SAUSA300_1301
  • PFAM:
    vWA-like (CL0128) CobT_C; Cobalamin biosynthesis protein CobT VWA domain (PF11775; HMM-score: 24.8)
    VWA; von Willebrand factor type A domain (PF00092; HMM-score: 21.6)
    and 2 more
    VWA_2; von Willebrand factor type A domain (PF13519; HMM-score: 19.4)
    Homing_endonuc (CL0324) LAGLIDADG_1; LAGLIDADG endonuclease (PF00961; HMM-score: 13.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7746
    • Cytoplasmic Membrane Score: 0.209
    • Cell wall & surface Score: 0.0018
    • Extracellular Score: 0.0146
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001082
    • TAT(Tat/SPI): 0.000433
    • LIPO(Sec/SPII): 0.000245
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTQVKIQKFPYYNPVQNVLITSWFWSHRPSHIEMAGLKTDVMLAAYGYHMMDVQIVNEVVQDKTFKHPKFYQQLFKLLEDMRVLNSIKVERPSTAKLIDLRLDTRISYTESQIKVYRTKTQYTDLLFLYLEHAFLSQDFFDIPSIHSDLDDILVNMFLYLPNFFQNQNSEDNMYLAQRIMYQVDDILKEDMLNEYYYLPKTLYNTLASPEFDDLKRTDASQVDGQDDTSEDDDNESEKADSKSADSESKGGAYLEMELHEGQNSETLGNDEAREGDATDDMTDMMTKKGKGSNDTLNREEGDAVGQSQAFQLDGVNKNVEIKWQIPEIEPQYVLEYQESKQDVQYEIKDLIQIIKKTIEREQRDARFNLTKGRLQKDLINWFIDDQYKLFYKKQDLSKSFDATFTLLIDASASMHDKMAETKKGVVLFHETLKALNIKHEILSFSEDAFDSDEHAQPNIINEIINYDYSTFEKDGPRIMALEPQDDNRDGVAIRVASERLMRRNQHQRFLIVFSDGEPSAFNYSQDGIIDTYEAVEMSRKFGIEVFNVFLSQDPITEDVEQTIHNIYGQYAIFVEGVAHLPGHLSPLLKKLLLKSL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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