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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS07080 [old locus tag: SAUSA300_1301 ]
- pan locus tag?: SAUPAN003826000
- symbol: SAUSA300_RS07080
- pan gene symbol?: —
- synonym:
- product: nitric oxide reductase activation protein NorD
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS07080 [old locus tag: SAUSA300_1301 ]
- symbol: SAUSA300_RS07080
- product: nitric oxide reductase activation protein NorD
- replicon: chromosome
- strand: -
- coordinates: 1431401..1433287
- length: 1887
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1431401..1433287) NCBI
- BioCyc: SAUSA300_RS07080 BioCyc
- MicrobesOnline: see SAUSA300_1301
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1861ATGAGTGATCGTTTCATAAAATTTAATGACGAACAGTTAGATGCCAAGCAAGTAATGATG
TTGCAAGACTTAGCTCGACTCTTATTAAAAAATGAACAAACACAAGTTAAAATCCAAAAA
TTCCCTTACTATAATCCTGTTCAAAATGTTTTGATTACGAGTTGGTTTTGGTCACATCGA
CCAAGCCATATCGAAATGGCTGGTTTAAAAACAGATGTTATGTTAGCTGCTTACGGTTAT
CATATGATGGATGTACAAATTGTAAATGAAGTAGTACAAGATAAAACTTTTAAACACCCT
AAATTTTATCAACAACTTTTTAAATTATTAGAAGATATGCGCGTATTAAATTCTATTAAA
GTTGAGCGCCCAAGTACTGCTAAATTAATTGATCTTCGCTTAGATACACGTATATCATAT
ACGGAATCTCAAATTAAAGTGTATCGTACTAAAACACAATATACAGATTTATTATTTTTG
TATTTAGAACATGCATTTTTAAGCCAAGATTTCTTTGATATACCATCTATACATTCAGAT
TTAGATGATATTTTAGTAAATATGTTCTTATATTTACCTAATTTTTTCCAAAATCAAAAT
TCTGAAGATAATATGTATCTGGCTCAAAGAATTATGTATCAAGTAGATGATATTTTAAAA
GAAGATATGCTAAACGAATATTATTACTTACCTAAAACACTATATAATACATTAGCTAGT
CCAGAGTTTGATGATTTAAAGAGAACTGATGCAAGTCAAGTCGATGGGCAAGATGATACT
TCAGAAGATGATGATAACGAAAGTGAAAAAGCTGACTCTAAATCTGCAGATAGTGAGTCA
AAAGGTGGCGCCTATTTAGAAATGGAGCTTCACGAAGGACAAAATAGTGAAACATTAGGT
AATGATGAAGCACGTGAAGGCGATGCTACAGATGATATGACTGATATGATGACCAAAAAG
GGCAAAGGATCAAACGATACGCTAAATCGTGAAGAAGGCGATGCTGTTGGTCAAAGCCAA
GCATTTCAACTTGATGGTGTGAACAAAAATGTAGAAATAAAATGGCAAATTCCTGAAATT
GAGCCACAATATGTTTTAGAATATCAAGAATCGAAACAAGACGTACAATATGAAATCAAA
GACTTAATTCAAATTATAAAGAAAACGATTGAACGAGAACAACGAGATGCACGTTTTAAT
TTAACAAAAGGGCGATTACAAAAGGATTTAATTAATTGGTTTATCGACGATCAATATAAA
TTGTTTTACAAAAAACAAGATTTAAGTAAATCATTTGATGCGACATTTACATTGTTAATT
GATGCGTCAGCAAGTATGCATGATAAAATGGCTGAAACGAAGAAAGGTGTAGTGTTATTC
CACGAGACGTTAAAAGCATTGAACATTAAACATGAAATTTTATCATTCAGTGAGGATGCC
TTTGATTCAGACGAGCATGCACAACCAAATATCATTAATGAAATTATTAACTATGATTAC
TCAACCTTTGAAAAAGATGGCCCACGTATTATGGCACTTGAACCTCAAGATGATAATCGT
GATGGTGTTGCTATTAGAGTTGCAAGTGAACGATTAATGCGTCGAAATCAACATCAACGA
TTTTTAATCGTATTTTCAGACGGCGAACCGTCTGCATTTAATTATAGTCAAGATGGTATT
ATTGATACGTATGAAGCTGTAGAAATGTCACGTAAATTTGGTATTGAAGTATTTAATGTA
TTTTTGAGTCAAGATCCAATAACTGAAGATGTTGAACAAACAATTCATAATATTTATGGT
CAATATGCTATTTTCGTTGAAGGTGTTGCGCATTTACCTGGACATCTCTCTCCATTATTA
AAAAAATTACTACTTAAATCTTTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS07080 [old locus tag: SAUSA300_1301 ]
- symbol: SAUSA300_RS07080
- description: nitric oxide reductase activation protein NorD
- length: 628
- theoretical pI: 4.50167
- theoretical MW: 73099.7
- GRAVY: -0.581051
⊟Function[edit | edit source]
- TIGRFAM: Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin cobaltochelatase, CobT subunit (TIGR01651; EC 6.6.1.2; HMM-score: 21.5)
- TheSEED: see SAUSA300_1301
- PFAM: vWA-like (CL0128) CobT_C; Cobalamin biosynthesis protein CobT VWA domain (PF11775; HMM-score: 25.1)VWA; von Willebrand factor type A domain (PF00092; HMM-score: 25)VWA_2; von Willebrand factor type A domain (PF13519; HMM-score: 21.5)and 1 moreHoming_endonuc (CL0324) LAGLIDADG_1; LAGLIDADG endonuclease (PF00961; HMM-score: 14)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001082
- TAT(Tat/SPI): 0.000433
- LIPO(Sec/SPII): 0.000245
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 447206409 NCBI
- RefSeq: WP_001283665 NCBI
- UniProt: see SAUSA300_1301
⊟Protein sequence[edit | edit source]
- MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTQVKIQKFPYYNPVQNVLITSWFWSHRPSHIEMAGLKTDVMLAAYGYHMMDVQIVNEVVQDKTFKHPKFYQQLFKLLEDMRVLNSIKVERPSTAKLIDLRLDTRISYTESQIKVYRTKTQYTDLLFLYLEHAFLSQDFFDIPSIHSDLDDILVNMFLYLPNFFQNQNSEDNMYLAQRIMYQVDDILKEDMLNEYYYLPKTLYNTLASPEFDDLKRTDASQVDGQDDTSEDDDNESEKADSKSADSESKGGAYLEMELHEGQNSETLGNDEAREGDATDDMTDMMTKKGKGSNDTLNREEGDAVGQSQAFQLDGVNKNVEIKWQIPEIEPQYVLEYQESKQDVQYEIKDLIQIIKKTIEREQRDARFNLTKGRLQKDLINWFIDDQYKLFYKKQDLSKSFDATFTLLIDASASMHDKMAETKKGVVLFHETLKALNIKHEILSFSEDAFDSDEHAQPNIINEIINYDYSTFEKDGPRIMALEPQDDNRDGVAIRVASERLMRRNQHQRFLIVFSDGEPSAFNYSQDGIIDTYEAVEMSRKFGIEVFNVFLSQDPITEDVEQTIHNIYGQYAIFVEGVAHLPGHLSPLLKKLLLKSL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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