From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS03545 [old locus tag: SAUSA300_0660 ]
  • pan locus tag?: SAUPAN002557000
  • symbol: SAUSA300_RS03545
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS03545 [old locus tag: SAUSA300_0660 ]
  • symbol: SAUSA300_RS03545
  • product: membrane protein
  • replicon: chromosome
  • strand: +
  • coordinates: 736460..736948
  • length: 489
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACAATTATTTTATGGCTACTTATCATCGCTGCCTTCATGTTAGCATTTGTTGGGTTG
    ATTAAGCCGATTATTCCTTCTGTTTTAGTATTATGGGTTGGCTTTTTAATCTATCAATTT
    GGCTTTCATAATCAGCATTTATCATGGGTGTTTTATGTATCTATGGCATTGCTAACAATA
    TTAATTTTATGTGCCGACTTTTTAGCTAATAAATATTTTGTGAATCGCTTCGGTGGTTCT
    AAGTTTGGAGAGTATGCAGCTTTAATTGGTGTGGTTATTGGATGTTTTGTTTTACCGCCA
    TTTGGAATTATTATTATACCTTTTATTTTGGTATTCATAGTTGAATTAATACAAGGCTAT
    TCATTTGAAAGAGCAGTTAAAGTAAGTATAGGTTCAATCGTAGCATTTTTAACAAGTAGT
    ATAGCTCAAGCAATCATTATGTTTATAATGATTGTATGGTTCTTTATAGATGCTTTATTG
    ATTAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    489

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS03545 [old locus tag: SAUSA300_0660 ]
  • symbol: SAUSA300_RS03545
  • description: membrane protein
  • length: 162
  • theoretical pI: 8.20836
  • theoretical MW: 18178.2
  • GRAVY: 1.57901

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_0660
  • PFAM:
    Glycine-zipper (CL0500) DUF456; Protein of unknown function (DUF456) (PF04306; HMM-score: 124.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002699
    • TAT(Tat/SPI): 0.000213
    • LIPO(Sec/SPII): 0.065586
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUSA300_RS03545&oldid=64278"