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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2020 [new locus tag: SAUSA300_RS11110 ]
  • pan locus tag?: SAUPAN005330000
  • symbol: SAUSA300_2020
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2020 [new locus tag: SAUSA300_RS11110 ]
  • symbol: SAUSA300_2020
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2181964..2182419
  • length: 456
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAATAATGACAAACTTCAGCGAATGGTTGAGAATCTTTCGGAAGAAAAATTTGGACGT
    ACGTTTCGACATTGTGCATATTTTAATAAAAGGTTACGTACAACAGGCGGACGTTATCTT
    TTAAAGTCCCATGATATTGAAATTAATCCAAAACAATATGAGCATTATGGAGAAGATGCT
    GTTGTAAAAATTATACTGCACGAATTGTGTCATTATCACTTGCATATTGCTGGTAAAGGT
    TATCAACATAAAGATCAAGATTTTAAACGATTGAGCCAACAGGTTGGAGCGCCTAGATTT
    TGTAACAGCATTGAAAGCTATCAACAACGGGCAAATTATGAATATTATTGCACTAAATGT
    CATGCAAAATATATACGTATCCGTAAAGTTGATACGAATCGTATGCGTTGCGGACATTGC
    AATGGAAAATTAAGAATGAAAAGACAATTGAAATAA
    60
    120
    180
    240
    300
    360
    420
    456


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_2020 [new locus tag: SAUSA300_RS11110 ]
  • symbol: SAUSA300_2020
  • description: hypothetical protein
  • length: 151
  • theoretical pI: 10.0258
  • theoretical MW: 18185.8
  • GRAVY: -1.01589

⊟Function[edit | edit source]

  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions putative regulatory protein, FmdB family (TIGR02605; HMM-score: 21.5)
  • TheSEED  :
    • Putative metallopeptidase (Zinc) SprT family
    CBSS-393131.3.peg.612  Putative metallopeptidase (Zinc) SprT family
  • PFAM:
    Peptidase_MA (CL0126) SprT-like; SprT-like family (PF10263; HMM-score: 70.4)
    and 5 more
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_SprT; SprT-like zinc ribbon domain (PF17283; HMM-score: 46.9)
    Zn_ribbon_8; Zinc ribbon domain (PF09723; HMM-score: 20.2)
    no clan defined DUF5816; Family of unknown function (DUF5816) (PF19133; HMM-score: 13.9)
    Zn_Beta_Ribbon (CL0167) DUF7815; Domain of unknown function (DUF7815) (PF25122; HMM-score: 12)
    Zn_ribbon_RRN7; Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 (PF11781; HMM-score: 8.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.992
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0.0017
    • Extracellular Score: 0.0057
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00798
    • TAT(Tat/SPI): 0.000876
    • LIPO(Sec/SPII): 0.001434
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNNDKLQRMVENLSEEKFGRTFRHCAYFNKRLRTTGGRYLLKSHDIEINPKQYEHYGEDAVVKIILHELCHYHLHIAGKGYQHKDQDFKRLSQQVGAPRFCNSIESYQQRANYEYYCTKCHAKYIRIRKVDTNRMRCGHCNGKLRMKRQLK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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