From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1414 [new locus tag: SAUSA300_RS07715 ]
  • pan locus tag?: SAUPAN001477000
  • symbol: SAUSA300_1414
  • pan gene symbol?: —
  • synonym:
  • product: phiSLT ORF 78B-like protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1414 [new locus tag: SAUSA300_RS07715 ]
  • symbol: SAUSA300_1414
  • product: phiSLT ORF 78B-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1578618..1578854
  • length: 237
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGATTAACATACCTAAAATGAAATTCCCGAAAAAGTACACTGAAATAATCAAAAAATAT
    AAAAATAAAGCACCTGAAGAAAAGGCTAAGATTGAAGATGATTTTATTAAAGAAATTAAA
    GATAAAGACAGTGAATTTTACAGTCCTACGATGGCTAATATGAATGAATATGAATTAAGG
    GCTATGTTAAGAATGATGCCTAGTTTAATTGATACTGGAGATGACAATGATGATTAA
    60
    120
    180
    237

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1414 [new locus tag: SAUSA300_RS07715 ]
  • symbol: SAUSA300_1414
  • description: phiSLT ORF 78B-like protein
  • length: 78
  • theoretical pI: 4.89007
  • theoretical MW: 9284.69
  • GRAVY: -1.00641

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General modD protein (TIGR01334; HMM-score: 12.6)
  • TheSEED  :
    • Hypothetical protein, SAV0880 homolog [SA bacteriophages 11, Mu50B]
  • PFAM:
    no clan defined Rpn3_C; Proteasome regulatory subunit C-terminal (PF08375; HMM-score: 14.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004908
    • TAT(Tat/SPI): 0.00034
    • LIPO(Sec/SPII): 0.000719
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MINIPKMKFPKKYTEIIKKYKNKAPEEKAKIEDDFIKEIKDKDSEFYSPTMANMNEYELRAMLRMMPSLIDTGDDNDD

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUSA300_1414&oldid=71326"