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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1132 [new locus tag: SAUSA300_RS06125 ]
- pan locus tag?: SAUPAN003528000
- symbol: rimM
- pan gene symbol?: rimM
- synonym:
- product: 16S rRNA-processing protein RimM
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1132 [new locus tag: SAUSA300_RS06125 ]
- symbol: rimM
- product: 16S rRNA-processing protein RimM
- replicon: chromosome
- strand: +
- coordinates: 1240144..1240647
- length: 504
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914847 NCBI
- RefSeq: YP_493829 NCBI
- BioCyc: see SAUSA300_RS06125
- MicrobesOnline: 1292647 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGAGAGTTGAAGTTGGTCAAATTGTTAACACACATGGTATTAAAGGTGAAATTAAAGTA
AAATCCAATTCAGACTTTACAGACGTTCGTTTTCAACCCGGTCAAGTGCTGACAGTTGTG
CATAACAATAACGACCTTGAATATACTGTTAAGTCACATAGAGTGCATAAAGGGCTTCAT
ATGCTTACATTTGAAGGTATTAATAATATTAATGATATTGAGCATTTAAAAGGGAGTTCT
ATTTATCAAGAGCGTGATCATGAAGATATCGTACTTGAGGAAAATGAATTTTATTATTCA
GATATTATAGGATGTACAGTTTTTGATGATCAAGAAACACCAATAGGTCGTGTAATTAAT
ATATTTGAAACAGGTGCGAATGATGTGTGGGTGATTAAAGGATCTAAAGAATATTTGATT
CCTTATATTGCTGATGTTGTAAAAGAAGTGGATGTTGAAAATAAAAAAATTATCATCACG
CCAATGGAAGGATTGTTGGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1132 [new locus tag: SAUSA300_RS06125 ]
- symbol: RimM
- description: 16S rRNA-processing protein RimM
- length: 167
- theoretical pI: 4.60086
- theoretical MW: 19072.4
- GRAVY: -0.314371
⊟Function[edit | edit source]
- TIGRFAM: Transcription RNA processing 16S rRNA processing protein RimM (TIGR02273; HMM-score: 162.5)
- TheSEED :
- 16S rRNA processing protein RimM
- PFAM: EFTPs (CL0575) RimM; RimM N-terminal domain (PF01782; HMM-score: 84.6)and 2 morePRC-barrel (CL0350) PRC; PRC-barrel domain (PF05239; HMM-score: 52.5)no clan defined DUF4772; Domain of unknown function (DUF4772) (PF15997; HMM-score: 14.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009289
- TAT(Tat/SPI): 0.000262
- LIPO(Sec/SPII): 0.001629
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: rpsP > rimM > trmD > rplS
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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