PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003528000
• symbol^?: rimM
• synonym:
• description^?: 16S rRNA-processing protein RimM

  descriptions from strain specific annotations:

  • 16S rRNA-processing protein RimM
  • ribosome maturation factor RimM
  • 16S rRNA processing protein
• strand^?: +
• coordinates^?: 3867764..3868267
• synteny block^?: BlockID0026060
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1255 (rimM)
N315:
SA1082 (rimM)
NCTC8325:
SAOUHSC_01209 (rimM)
Newman:
NWMN_1149 (rimM)
USA300_FPR3757:
SAUSA300_1132 (rimM)
04-02981:
SA2981_1197 (rimM)
08BA02176:
C248_1270 (rimM)
11819-97:
MS7_1197 (rimM)
6850:
RSAU_001121 (rimM)
71193:
ST398NM01_1239
ECT-R 2:
ECTR2_1095 (rimM)
ED133:
SAOV_1242 (rimM)
ED98:
SAAV_1212 (rimM)
HO 5096 0412:
SAEMRSA15_10720 (rimM)
JH1:
SaurJH1_1323 (rimM)
JH9:
SaurJH9_1298 (rimM)
JKD6008:
SAA6008_01194 (rimM)
JKD6159:
SAA6159_01092 (rimM)
LGA251:
SARLGA251_11500 (rimM)
M013:
M013TW_1177
MRSA252:
SAR1215 (rimM)
MSHR1132:
SAMSHR1132_10820
MSSA476:
SAS1173 (rimM)
Mu3:
SAHV_1229 (rimM)
Mu50:
SAV1239 (rimM)
MW2:
MW1122 (rimM)
RF122:
SAB1103 (rimM)
ST398:
SAPIG1239 (rimM)
T0131:
SAT0131_01289 (nhaC)
TCH60:
HMPREF0772_11992 (rimM)
TW20:
SATW20_12330 (rimM)
USA300_TCH1516:
—
VC40:
SAVC_05360 (rimM)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
  N315            MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
  NCTC8325        MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
  Newman          MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
  USA300_FPR3757  MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLH
                  ************************************************************
  
  COL             MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
  N315            MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
  NCTC8325        MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
  Newman          MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
  USA300_FPR3757  MLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVIN
                  ************************************************************
  
  COL             IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
  N315            IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
  NCTC8325        IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
  Newman          IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
  USA300_FPR3757  IFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
                  ***********************************************