From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0749 [new locus tag: SAUSA300_RS04045 ]
  • pan locus tag?: SAUPAN002690000
  • symbol: SAUSA300_0749
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0749 [new locus tag: SAUSA300_RS04045 ]
  • symbol: SAUSA300_0749
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 835953..836948
  • length: 996
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAGACAAATAAAAGTTGTACTTATCGGTGGTGGCACTGGCTTATCAGTTATGGCTAGG
    GGATTAAGAGAATTCCCAATTGATATTACGGCGATTGTAACAGTTGCTGATAATGGTGGG
    AGTACAGGGAAAATCAGAGATGAAATGGATATACCAGCACCAGGAGACATCAGAAATGTG
    ATTGCAGCTTTAAGTGATTCTGAGTCAGTTTTAAGCCAACTTTTTCAGTATCGCTTTGAA
    GAAAATCAAATTAGCGGTCACTCATTAGGTAATTTATTAATCGCAGGTATGACTAATATT
    ACGAATGATTTCGGACATGCCATTAAAGCATTAAGTAAAATTTTAAATATTAAAGGTAGA
    GTCATTCCATCTACAAATACAAGTGTGCAATTAAATGCTGTTATGGAAGATGGAGAAATT
    GTTTTTGGAGAAACAAATATTCCTAAAAAACATAAAAAAATTGATCGTGTGTTTTTAGAA
    CCTAACGATGTGCAACCAATGGAAGAAGCAATCGATGCTTTAAGGGAAGCAGATTTAATC
    GTTCTTGGACCAGGGTCATTATATACGAGCGTTATTTCTAACTTATGTGTGAATGGTATT
    TCAGATGCGTTAATTCATTCTGATGCGCCTAAGCTATATGTTTCTAATGTGATGACGCAA
    CCTGGGGAAACAGATGGTTATAGCGTGAAAGATCATATCGATGCGATTCATAGACAAGCT
    GGACAACCGTTTATTGATTATGTCATTTGTAGTACACAAACTTTCAATGCTCAAGTTTTG
    AAAAAATATGAAGAAAAACATTCTAAACCAGTTGAAGTTAATAAGGCTGAACTTGAAAAA
    GAAAGCATAAATGTAAAAACATCTTCAAATTTAGTTGAAATTTCTGAAAATCATTTAGTA
    AGACATAATACTAAAGTGTTATCGACAATGATTTATGACATAGCTTTAGAATTAATTAGT
    ACTATTCCTTTCGTACCAAGTGATAAACGTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    996

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0749 [new locus tag: SAUSA300_RS04045 ]
  • symbol: SAUSA300_0749
  • description: hypothetical protein
  • length: 331
  • theoretical pI: 5.6146
  • theoretical MW: 36260.2
  • GRAVY: -0.121148

⊟Function[edit | edit source]

  • TIGRFAM:
    Hypothetical proteins Conserved conserved hypothetical protein (TIGR01826; HMM-score: 439.8)
    and 2 more
    CofD-related protein, GAK system (TIGR04357; HMM-score: 137.2)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other 2-phospho-L-lactate transferase (TIGR01819; EC 2.7.8.28; HMM-score: 35.4)
  • TheSEED  :
    • FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like
    Experimental tye  FIG002813: LPPG:FO 2-phospho-L-lactate transferase like, CofD-like
  • PFAM:
    no clan defined UPF0052; Uncharacterised protein family UPF0052 (PF01933; HMM-score: 349.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 0.83
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.145236
    • TAT(Tat/SPI): 0.007908
    • LIPO(Sec/SPII): 0.055567
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://fungenwikiserver.biologie.uni-greifswald.de/aureowiki/index.php?title=SAUSA300_0749&oldid=75476"