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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0584 [new locus tag: SAUSA300_RS03130 ]
  • pan locus tag?: SAUPAN002449000
  • symbol: SAUSA300_0584
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0584 [new locus tag: SAUSA300_RS03130 ]
  • symbol: SAUSA300_0584
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 657794..658435
  • length: 642
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    GTGGAGACATTGCTTTGCGAATCTAAAGTTATTAATAAAAACCCTAAATATCGAATAATC
    AAATACGATAGTGAATATTTAATGATTGATTTGGCAAGTAATTGGATTGTCTTCTTCTTT
    CCATTTATTAACTGGCTCATACCGAAAACATATGTCAAAATCACTAAGAATGATTATGAA
    AAATTAAATATTGTCAAACCAGTTAAAAATAAATCGATAGGATGGACCATATTCGCGGGT
    ATTGTGTTACTTGGTGGTACTGTAAGAAGAAATACTTATTTATTTGATTTTCAATTAGAA
    GAACTAATTGTTTGGAGCAGCTGTTTCATTGGGTTTTTAGAGATTATATTTTTTTATTGT
    TATCTAAATAAGAAATTAACATTAAATATTTATAATGAAAGTAAAAATAATGAACTTAAA
    TTAAGATTATTACCCTCCTTTAAAAATATTTGTTTCACAATTTTTTATTACCTATTTACT
    GGTTTCATGTCTTATGGGGCATTTTACTTGTTGGTATTTGAAAATGTGCAAAATTTAATC
    TTATATGTTTCTTGGCTTTTCATGACTATGCTATTTATGTTTATGAATATGCATTCAATT
    ATAGATAAAAAAGTACATATATTCTTAAAGTCTAATAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    642


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0584 [new locus tag: SAUSA300_RS03130 ]
  • symbol: SAUSA300_0584
  • description: hypothetical protein
  • length: 213
  • theoretical pI: 9.58163
  • theoretical MW: 25574.3
  • GRAVY: 0.346009

⊟Function[edit | edit source]

  • TIGRFAM:
    tandem five-TM protein (TIGR01218; HMM-score: 183.6)
  • TheSEED  :
    • repetative hypothetical protein , fig|282458.1.peg.574 homolog
  • PFAM:
    no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 229.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0009
    • Cytoplasmic Membrane Score: 0.9583
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0408
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001799
    • TAT(Tat/SPI): 0.000091
    • LIPO(Sec/SPII): 0.000366
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYEKLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYCYLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLILYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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