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NCBI: 01-DEC-2025
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: EGJ38_000561 [new locus tag: EGJ38_RS02800 ]
- pan locus tag?: SAUPAN002449000
- symbol: EGJ38_000561
- pan gene symbol?: —
- synonym:
- alternate name: JSNZ_000561
- product: DUF443 domain-containing protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: EGJ38_000561 [new locus tag: EGJ38_RS02800 ]
- symbol: EGJ38_000561
- product: DUF443 domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 599857..600497
- length: 641
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
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541
601GTGGAGATAATGCTTTGCGAATCTAAAGTTATTAATAAAAACCCTAAATATCGAATAATC
AAATACGATAGTGAATATTTAATGATTGATTTGGCAAGTAATTGGATTGTCTTCTTCTTT
CCATTTATTAACTGGCTCATACCGAAAACATATGTCAAAATCACTAAGAATGATTATGAA
AAATTAAATATTGTCAAACCAGTTAAAAATAAATCGATAGGATGGACCATATTCGCGGGT
ATTGTGTTACTTGGTGGTACTGTAAGAAGAAATACTTATTTATTTGATTTTCAATTAGAA
GAACTAATCGTTTGGAGCAGCTGTTTCATTGGGTTTTTAGGGATTATATTTTTTATTGTT
ATCTAAATAAGAAATTAACATTAAATATTTATAATGAAAGTAAAAATAATGAACTTAAAT
TAAGATTATTACCCTCCTTTAAAAATATTTGTTTCACAATTTTTTATTACCTATTTACTG
GTTTCATGTCTTATGGGGCATTTTACTTGTTGGTGTTTGAAAATGTGCAAAATTTAATCT
TATATGTTTCTTGGCTTTTCATGACTATGCTATTTATGTTTATGAATATGCATTCAATTA
TAGATAAAAAAGTACATATATTCTTAAAGTCTAATAAATAG60
120
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: EGJ38_000561 [new locus tag: EGJ38_RS02800 ]
- symbol: EGJ38_000561
- description: DUF443 domain-containing protein
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- DeepLocPro:
- LocateP:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : tspA > EGJ38_000555 > EGJ38_000556 > EGJ38_000557 > EGJ38_000558 > EGJ38_000559 > EGJ38_000560 > EGJ38_000561 > EGJ38_000562 > EGJ38_000563 > EGJ38_000564 > EGJ38_000565 > EGJ38_000566 > EGJ38_000567
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)