Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN006414000
- symbol?: icaC
- synonym:
- description?: intercellular adhesion protein C
- intercellular adhesion protein C
- poly-beta-1,6-N-acetyl-D-glucosamine export protein
- acyltransferase family protein
- intercellular adhesion protein C IcaC
- intercellular adhesion protein IcaC
- biofilm PIA synthesis protein icaC (Intercellular adhesion protein C)
- Polysaccharide intercellular adhesin (PIA) biosynthesis protein IcaC
- polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation-like protein
- pseudogene
- putative poly-beta-1,6-N-acetyl-D-glucosamine export protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6463810..6464874
- synteny block?: BlockID0051210
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2608 (icaC)
08BA02176:
C248_2738 (icaC)
11819-97:
MS7_2674 (icaC)
6850:
RSAU_002513 (icaC)
71193:
ST398NM01_2720
ECT-R 2:
ECTR2_2522
ED133:
SAOV_2720
ED98:
SAAV_2741 (icaC)
HO 5096 0412:
SAEMRSA15_25760 (icaC)
JH1:
SaurJH1_2750
JH9:
SaurJH9_2693
JKD6008:
SAA6008_02728 (icaC)
JKD6159:
SAA6159_02565 (icaC)
LGA251:
SARLGA251_24430 (icaC)
M013:
M013TW_2652
MRSA252:
SAR2750 (icaC)
MSHR1132:
SAMSHR1132_24970
MSSA476:
SAS2555
Mu3:
SAHV_2653 (icaC)
Mu50:
SAV2669 (icaC)
MW2:
MW2589 (icaC)
RF122:
SAB2544 (icaC)
ST398:
SAPIG2720
T0131:
SAT0131_02947
TCH60:
HMPREF0772_10517 (icaC)
TW20:
SATW20_28070 (icaC)
USA300_TCH1516:
USA300HOU_2669 (icaC)
VC40:
SAVC_12225
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIIL
NCTC8325 MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIIL
Newman MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIIL
USA300_FPR3757 MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIIL
************************************************************
N315 SQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQW
NCTC8325 SQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQW
Newman SQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQW
USA300_FPR3757 SQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQW
************************************************************
N315 YGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYY
NCTC8325 YGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYY
Newman YGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYY
USA300_FPR3757 YGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYY
************************************************************
N315 PLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWN
NCTC8325 PLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWN
Newman PLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWN
USA300_FPR3757 PLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWN
************************************************************
N315 VTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTN
NCTC8325 VTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTN
Newman VTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTN
USA300_FPR3757 VTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTN
************************************************************
N315 IFEDNTMVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
NCTC8325 IFEDNTMVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
Newman IFEDNTMVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
USA300_FPR3757 IFEDNTMVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
**************************************************