PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006224000
• symbol^?: —
• synonym:
• description^?: N-succinyldiaminopimelate aminotransferase

  descriptions from strain specific annotations:

  • N-succinyldiaminopimelate aminotransferase
  • aminotransferase, class I
  • aminotransferase, putative
  • aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
  • class I aminotransferase
  • class I and II aminotransferase
  • putative aminotransferase
  • putative aspartate aminotransferase (Transaminase A)(ASPAT)
  • transaminase
  • transaminase MtnE
• strand^?: -
• coordinates^?: 6286831..6287985
• synteny block^?: BlockID0049480
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2575
N315:
SA2347
NCTC8325:
SAOUHSC_02876
Newman:
NWMN_2460
USA300_FPR3757:
SAUSA300_2497
04-02981:
SA2981_2497
08BA02176:
C248_2618
11819-97:
MS7_2567
6850:
RSAU_002401
71193:
ST398NM01_2611
ECT-R 2:
ECTR2_2413
ED133:
SAOV_2605c
ED98:
SAAV_2626
HO 5096 0412:
SAEMRSA15_24630
JH1:
SaurJH1_2636
JH9:
SaurJH9_2582
JKD6008:
SAA6008_02599
JKD6159:
SAA6159_02456
LGA251:
SARLGA251_23350
M013:
M013TW_2534
MRSA252:
SAR2641
MSHR1132:
SAMSHR1132_23810
MSSA476:
SAS2446
Mu3:
SAHV_2544
Mu50:
SAV2560
MW2:
MW2481
RF122:
SAB2433c
ST398:
SAPIG2611
T0131:
SAT0131_02771
TCH60:
HMPREF0772_10629 (ywfG)
TW20:
SATW20_26820
USA300_TCH1516:
USA300HOU_2555
VC40:
SAVC_11680

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
  N315            MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
  NCTC8325        MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
  Newman          MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
  USA300_FPR3757  MISNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK
                  ************************************************************
  
  COL             YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
  N315            YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
  NCTC8325        YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
  Newman          YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
  USA300_FPR3757  YGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPD
                  ************************************************************
  
  COL             PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
  N315            PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSTVDSQIIDKTKLIYLTYPNNPTGSTATK
  NCTC8325        PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
  Newman          PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
  USA300_FPR3757  PGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATK
                  ********************************.***************************
  
  COL             EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
  N315            EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
  NCTC8325        EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
  Newman          EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
  USA300_FPR3757  EVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF
                  ************************************************************
  
  COL             RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
  N315            RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
  NCTC8325        RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
  Newman          RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
  USA300_FPR3757  RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFE
                  ************************************************************
  
  COL             AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
  N315            AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
  NCTC8325        AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
  Newman          AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
  USA300_FPR3757  AMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRI
                  ************************************************************
  
  COL             SLALDDQKLDEAAIRLTELAYLYE
  N315            SLALDDQKLDEAAIRLTELAYLYE
  NCTC8325        SLALDDQKLDEAAIRLTELAYLYE
  Newman          SLALDDQKLDEAAIRLTELAYLYE
  USA300_FPR3757  SLALDDQKLDEAAIRLTELAYLYE
                  ************************