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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006056000
- symbol?: —
- synonym:
- description?: oxidoreductase
- oxidoreductase
- NAD-dependent epimerase/dehydratase
- SDR family oxidoreductase
- short chain dehydrogenase, putative
- short chain dehydrogenase/reductase family oxidoreductase
- short chain dehydrogenase/reductase oxidoreductase
- clavaldehyde dehydrogenase
- oxidoreductase, short-chain dehydrogenase
- Oxidoreductase, short-chaindehydrogenase/reductase family
- oxidoreductase family protein
- pseudogene
- putative short chain dehydrogenase
- Short-chain alcohol dehydrogenase
- short-chain dehydrogenase/reductase SDR
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6109222..6109917
- synteny block?: BlockID0047980
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2415
08BA02176:
C248_2535
11819-97:
MS7_2489
6850:
RSAU_002317
71193:
ST398NM01_2535
ECT-R 2:
ECTR2_2335
ED133:
SAOV_2526c
ED98:
SAAV_2544
HO 5096 0412:
SAEMRSA15_23760
JH1:
SaurJH1_2555
JH9:
SaurJH9_2505
JKD6008:
SAA6008_02519
JKD6159:
SAA6159_02374
LGA251:
SARLGA251_22640
M013:
M013TW_2439
MRSA252:
SAR2567
MSHR1132:
SAMSHR1132_23010
MSSA476:
SAS2370
Mu3:
SAHV_2462
Mu50:
SAV2478
MW2:
MW2403
RF122:
SAB2359c
ST398:
SAPIG2535
T0131:
SAT0131_02677 (uppS)
TCH60:
HMPREF0772_10709 (bdhA)
TW20:
SATW20_26050
USA300_TCH1516:
USA300HOU_2470
VC40:
SAVC_11265
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTVLTDKVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPT
N315 MTVLTDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPT
NCTC8325 MTVLTDKVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPT
Newman MTVLTDKVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPT
USA300_FPR3757 MTVLTDKVAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPT
*******:********************************:*********:*********
COL DVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTA
N315 DVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTA
NCTC8325 DVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTA
Newman DVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTA
USA300_FPR3757 DVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTA
***********:************************************************
COL QAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTS
N315 QAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTS
NCTC8325 QAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTS
Newman QAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTS
USA300_FPR3757 QAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTS
************************************************************
COL ISPGMVDTAITAAYNPTDRKKLEPQDIAEAVLYALTQPKHVNVNEITVRPV
N315 ISPGMVDTAITAAYNPSDRKKLDPQDIAEAVLYALTQPKHVNVNEITVRPV
NCTC8325 ISPGMVDTAITAAYNPTDRKKLEPQDIAEAVLYALTQPKHVNVNEITVRPV
Newman ISPGMVDTAITAAYNPTDRKKLEPQDIAEAVLYALTQPKHVNVNEITVRPV
USA300_FPR3757 ISPGMVDTAITAAYNPTDRKKLEPQDIAEAVLYALTQPKHVNVNEITVRPV
****************:*****:****************************