PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006049000
• symbol^?: —
• synonym:
• description^?: DUF1433 domain-containing protein

  descriptions from strain specific annotations:

  • DUF1433 domain-containing protein
  • lipoprotein with DUF1433
  • pseudogene
• strand^?: -
• coordinates^?: 6100804..6101971
• synteny block^?: BlockID0047920
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL2487
N315:
SA2265
NCTC8325:
SAOUHSC_02777
Newman:
NWMN_2374
USA300_FPR3757:
SAUSA300_2421
04-02981:
SA2981_2414
08BA02176:
—
11819-97:
—
6850:
RSAU_002316
71193:
—
ECT-R 2:
ECTR2_2334
ED133:
—
ED98:
SAAV_2543
HO 5096 0412:
SAEMRSA15_23750
JH1:
SaurJH1_2554
JH9:
SaurJH9_2504
JKD6008:
SAA6008_02518
JKD6159:
SAA6159_02373
LGA251:
SARLGA251_22600
M013:
M013TW_2438
MRSA252:
SAR2566
MSHR1132:
—
MSSA476:
SAS2369
Mu3:
SAHV_2461
Mu50:
SAV2477
MW2:
MW2402
RF122:
—
ST398:
—
T0131:
SAT0131_02676 (frr)
TCH60:
HMPREF0772_10710
TW20:
—
USA300_TCH1516:
USA300HOU_2469
VC40:
SAVC_11260

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
  N315            MLVLWFIIYNVRNYRLQKNFIFHHILGVTLMNKKHVFIIIGVILCICIVASVIYLKVKYD
  NCTC8325        ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
  Newman          ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
  USA300_FPR3757  ------------------------------MNKKHVFIIIGVILCICIVASVIYLKVKYD
                                                ******************************
  
  COL             EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
  N315            EKEKQKAIYYKEQQERITLYLNHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
  NCTC8325        EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
  Newman          EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
  USA300_FPR3757  EKEKQKAIYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKRGPMGDAVIEGYINENKEDD
                  *********************:**************************************
  
  COL             FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
  N315            FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
  NCTC8325        FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
  Newman          FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
  USA300_FPR3757  FVAYGSPEHNYQFGGSLIKSKNLSTLLKPVHQTKSPDEIKKELESKKNDR
                  **************************************************