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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005819000
- symbol?: hutR
- synonym:
- description?: LysR family transcriptional regulator
- LysR family transcriptional regulator
- LysR family regulatory protein
- LysR family transcriptional regulator, putative
- bacterial regulatory helix-turn-helix , lysR family protein
- LysR substrate-binding
- regulatory helix-turn-helix protein, lysR family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5904112..5904996
- synteny block?: BlockID0045640
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2271
08BA02176:
C248_2375
11819-97:
MS7_2350
6850:
RSAU_002168
71193:
ST398NM01_2384
ECT-R 2:
ECTR2_2192
ED133:
SAOV_2372
ED98:
SAAV_2396
HO 5096 0412:
SAEMRSA15_22300
JH1:
SaurJH1_2400
JH9:
SaurJH9_2357
JKD6008:
SAA6008_02369
JKD6159:
SAA6159_02237
LGA251:
SARLGA251_21150
M013:
M013TW_2290
MRSA252:
SAR2418
MSHR1132:
SAMSHR1132_21570
MSSA476:
SAS2225
Mu3:
SAHV_2316
Mu50:
SAV2332
MW2:
MW2253
RF122:
SAB2209
ST398:
SAPIG2384
T0131:
SAT0131_02516
TCH60:
HMPREF0772_10862
TW20:
SATW20_24640
USA300_TCH1516:
USA300HOU_2312
VC40:
SAVC_10525
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLGYDLFTRSTKDIKITEK
N315 MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLGYDLFTRSTKDIKITEK
NCTC8325 MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLGYDLFTRSTKDIKITEK
Newman MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLGYDLFTRSTKDIKITEK
USA300_FPR3757 MKIIQLEYFLAIVKYNSFTKAAQFLHISQPSLTATIKKMEADLGYDLFTRSTKDIKITEK
************************************************************
COL GIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTNQWIANLIRKHHSDYPEQQ
N315 GIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTNQWIANLIRKHHSDYPEQQ
NCTC8325 GIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTNQWIANLIRKHHSDYPEQQ
Newman GIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTNQWIANLIRKHHSDYPEQQ
USA300_FPR3757 GIQFYRYASELVQQYRSTMEKMYDLSVTSEPRIKIGTLESTNQWIANLIRKHHSDYPEQQ
************************************************************
COL YRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPLYEESYILLAPKETFKNQNWV
N315 YRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPLYEESYILLAPKETFKNQNWV
NCTC8325 YRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPLYEESYILLAPKETFKNQNWV
Newman YRLYEIHDKHQSIEQLLNFNIHLAITNGKITHEDIRSIPLYEESYILLAPKETFKNQNWV
USA300_FPR3757 YRLYEIHDKHQSIEQLLNFNIHLAITNEKITHEDIRSIPLYEESYILLAPKETFKNQNWV
*************************** ********************************
COL DVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETDRFESAVGFVHLGLGYAIIPRFY
N315 DVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETDRFESAVGFVHLGLGYAIIPRFY
NCTC8325 DVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETDRFESAVGFVHLGLGYAIIPRFY
Newman DVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETDRFESAVGFVHLGLGYAIIPRFY
USA300_FPR3757 DVENLPLILPNKNSQVRKHLDDYFNRRNIRPNVVVETDRFESAVGFVHLGLGYAIIPRFY
************************************************************
COL YQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQVHTFVQQCQDYLYGLLEAL
N315 YQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQVHTFVQQCQDYLYGLLEAL
NCTC8325 YQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQVHTFVQQCQDYLYGLLEAL
Newman YQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQVHTFVQQCQDYLYGLLEAL
USA300_FPR3757 YQSFHTSNLEYKKIRPNLGRKIYINYHKKRKHSEQVHTFVQQCQDYLYGLLEAL
******************************************************