Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005764000
- symbol?: —
- synonym:
- description?: AraC family transcriptional regulator
- AraC family transcriptional regulator
- helix-turn-helix transcriptional regulator
- transcriptional regulator, putative
- transcriptional regulator AraC family protein
- Transcription regulator
- AraC family regulatory protein
- bacterial regulatory helix-turn-helix s, AraC family protein
- helix-turn-helix- domain containing protein
- putative transcriptional regulator
- regulatory helix-turn-helix proteins, AraC family protein
- transcriptional regulator
- transcriptional regulator, AraC family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5855731..5856810
- synteny block?: BlockID0045100
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2236
08BA02176:
C248_2337
11819-97:
MS7_2316
6850:
RSAU_002131
71193:
ST398NM01_2348
ECT-R 2:
ECTR2_2158
ED133:
SAOV_2337c
ED98:
SAAV_2360
HO 5096 0412:
SAEMRSA15_21950
JH1:
SaurJH1_2365
JH9:
SaurJH9_2322
JKD6008:
SAA6008_02334
JKD6159:
SAA6159_02202
LGA251:
SARLGA251_20810
M013:
M013TW_2255
MRSA252:
SAR2382
MSHR1132:
SAMSHR1132_21230
MSSA476:
SAS2188
Mu3:
SAHV_2282
Mu50:
SAV2298
MW2:
MW2216
RF122:
SAB2170c
ST398:
SAPIG2348
T0131:
SAT0131_02477 (rnhC)
TCH60:
HMPREF0772_10900
TW20:
SATW20_24290
USA300_TCH1516:
USA300HOU_2279
VC40:
SAVC_10350
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTIIMLNDLYQI
N315 MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTVIMLNDLYQI
NCTC8325 MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTIIMLNDLYQI
Newman MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDVKRNDVTIIMLNDLYQI
USA300_FPR3757 MTDNYSLHIYKSMKMSSVKEANLKIIYWLQGTGVVSINLQQYDLKRNYVTIIMLNDLYQI
*******************************************:*** **:*********
COL DGNDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
N315 DGHDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
NCTC8325 DGNDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
Newman DGNDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
USA300_FPR3757 DGNDDSVCCVVEVSAKTFLKFMNANYMMRGKILTNEVASTFRILIKYLIYSKIKQQSYNA
**:*********************************************************
COL NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
N315 NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
NCTC8325 NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
Newman NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
USA300_FPR3757 NDKIINYMCVELMSLNTYDGSRHLVAEEVHDYLTNNHHKKINRKDVINQVSITNKALSDM
************************************************************
COL FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
N315 FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
NCTC8325 FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
Newman FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
USA300_FPR3757 FKATPYSNFIQYLNHIRLEHCLIDILTSKKPIEEIASSHGFNHYSRFIHLFKETYGNTPK
************************************************************
COL LIRKRYSPTSHSINHSQLVEIDKNIIELFDDTNQSSSSMREIDIPFEPTKRSQMYQPKNI
N315 LIRKRYSPTSHSINHSQLVEIDKNIIELFDNTNQSSSSMREIDIPFEPTKRSQMYQPKNI
NCTC8325 LIRKRYSPTSHSINHSQLVEIDKNIIELFDDTNQSSSSMREIDIPFEPTKRSQMYQPKNI
Newman LIRKRYSPTSHSINHSQLVEIDKNIIELFDDTNQSSSSMREIDIPFEPTKRSQMYQPKNI
USA300_FPR3757 LIRKRYSPTSHSINHSQLVEIDKNIIELFDDTNQSSSSMREIDIPFEPTKRSQMYQPKNI
******************************:*****************************
COL YIKGSNFYWMDYYTIKQIIQRLGVNPENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
N315 YIKGSNFYWMDYYTIKQIIQRLGVNLENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
NCTC8325 YIKGSNFYWMDYYTIKQIIQRLGVNPENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
Newman YIKGSNFYWMDYYTIKQIIQRLGVNPENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
USA300_FPR3757 YIKGSNFYWMDYYTIKQIIQRLGVNPENLHIIVTIDTSNELSIEQITLLLQKIVNYNVNV
************************* **********************************
COL VFRIKHEYKELLTSAERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
N315 VFRIKHEYKELLTSTERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
NCTC8325 VFRIKHEYKELLTSAERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
Newman VFRIKHEYKELLTSAERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
USA300_FPR3757 VFRIKHEYKELLTSAERGKIEKLVATIFNMTFESNRCKIAFLINDLNTTAIQKLKRLIDN
**************:*********************************************
COL YIGVFELIYHLEPKELNTRYDKEIDHLIDYFILPLRQIEQVSIARSKIICDVDLINENND
N315 YIGVFELIYHLEPKELNTHYDKEIDHLIDYFILPLRQIEQVSIACSKIICDVDLINENND
NCTC8325 YIGVFELIYHLEPKELNTRYDKEIDHLIDYFILPLRQIEQVSIARSKIICDVDLINENND
Newman YIGVFELIYHLEPKELNTRYDKEIDHLIDYFILPLRQIEQVSIARSKIICDVDLINENND
USA300_FPR3757 YIGVFELIYHLEPKELNTRYDKEIDHLIDYFILPLRQIEQVSIARSKIICDVDLINENND
******************:************************* ***************
COL LKEKITMSDINKVSELLTNYTKFRGLIMHMSIISESSKEINLTRLSIFIFIINILNQLRG
N315 LKEKITMSDFNKVTELLTNYTKFRGLIMHMSIISEASKEINLTRLSIFIFIINILNQLRG
NCTC8325 LKEKITMSDINKVSELLTNYTKFRGLIMHMSIISESSKEINLTRLSIFIFIINILNQLRG
Newman LKEKITMSDINKVSELLTNYTKFRGLIMHMSIISESSKEINLTRLSIFIFIINILNQLRG
USA300_FPR3757 LKEKITMSDINKVSELLTNYTKFRGLIMHMSIISESSKEINLTRLSIFIFIINILNQLRG
*********:***:*********************:************************
COL IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDK
N315 IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDK
NCTC8325 IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDK
Newman IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDK
USA300_FPR3757 IVIYQNDTMIVTKFKHEVQCVICLPAALLNENSDAIRLSCKGLQQFSHAKTKQIVLSIDK
************************************************************
COL DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
N315 DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
NCTC8325 DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
Newman DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
USA300_FPR3757 DNHTSENGVLVNDIMQQHSYWKANFIERNIYDHSLMVSSNSIVHLKYHLEI
***************************************************