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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005701000
- symbol?: rplD
- synonym:
- description?: 50S ribosomal protein L4
- 50S ribosomal protein L4
- 50S ribosomal protein L4/L1 family protein
- 50S ribosomal protein L4P
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5809719..5810342
- synteny block?: BlockID0044470
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2187 (rplD)
08BA02176:
C248_2285 (rplD)
11819-97:
MS7_2269 (rplD)
6850:
RSAU_002085 (rplD)
71193:
ST398NM01_2302
ECT-R 2:
ECTR2_2111
ED133:
SAOV_2286c
ED98:
SAAV_2311 (rplD)
HO 5096 0412:
SAEMRSA15_21480 (rplD)
JH1:
SaurJH1_2317 (rplD)
JH9:
SaurJH9_2276 (rplD)
JKD6008:
SAA6008_02286 (rplD)
JKD6159:
SAA6159_02156 (rplD)
LGA251:
SARLGA251_20350 (rplD)
M013:
M013TW_2208
MRSA252:
SAR2334 (rplD)
MSHR1132:
SAMSHR1132_20750
MSSA476:
SAS2140 (rplD)
Mu3:
SAHV_2233 (rplD)
Mu50:
SAV2249 (rplD)
MW2:
MW2168 (rplD)
RF122:
SAB2121c (rplD)
ST398:
SAPIG2302 (rplD)
T0131:
SAT0131_02422
TCH60:
HMPREF0772_10949 (rplD)
TW20:
SATW20_23830 (rplD)
USA300_TCH1516:
—
VC40:
SAVC_10115 (rplD)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG
N315 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG
NCTC8325 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG
Newman MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG
USA300_FPR3757 MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG
************************************************************
COL GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE
N315 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE
NCTC8325 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE
Newman GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE
USA300_FPR3757 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE
************************************************************
COL NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG
N315 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG
NCTC8325 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG
Newman NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG
USA300_FPR3757 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG
************************************************************
COL LNVLDITNADSLVITEAAAKKVEEVLG
N315 LNVLDITNADSLVITEAAAKKVEEVLG
NCTC8325 LNVLDITNADSLVITEAAAKKVEEVLG
Newman LNVLDITNADSLVITEAAAKKVEEVLG
USA300_FPR3757 LNVLDITNADSLVITEAAAKKVEEVLG
***************************