PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005692000
• symbol^?: rplN
• synonym:
• description^?: 50S ribosomal protein L14
• strand^?: -
• coordinates^?: 5805851..5806219
• synteny block^?: BlockID0044380
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2229 (rplN)
N315:
SA2037 (rplN)
NCTC8325:
SAOUHSC_02502 (rplN)
Newman:
NWMN_2142 (rplN)
USA300_FPR3757:
SAUSA300_2194 (rplN)
04-02981:
SA2981_2178 (rplN)
08BA02176:
C248_2276 (rplN)
11819-97:
MS7_2260 (rplN)
6850:
RSAU_002076 (rplN)
71193:
ST398NM01_2293
ECT-R 2:
ECTR2_2102 (rplN)
ED133:
SAOV_2277c
ED98:
SAAV_2302 (rplN)
HO 5096 0412:
SAEMRSA15_21390 (rplN)
JH1:
SaurJH1_2308 (rplN)
JH9:
SaurJH9_2267 (rplN)
JKD6008:
SAA6008_02277 (rplN)
JKD6159:
SAA6159_02147 (rplN)
LGA251:
SARLGA251_20260 (rplN)
M013:
M013TW_2199
MRSA252:
SAR2325 (rplN)
MSHR1132:
SAMSHR1132_20660
MSSA476:
SAS2131 (rplN)
Mu3:
SAHV_2224 (rplN)
Mu50:
SAV2240 (rplN)
MW2:
MW2159 (rplN)
RF122:
SAB2112c (rplN)
ST398:
SAPIG2293 (rplN)
T0131:
SAT0131_02413
TCH60:
HMPREF0772_10958 (rplN)
TW20:
SATW20_23740 (rplN)
USA300_TCH1516:
USA300HOU_2231 (rplN)
VC40:
SAVC_10070 (rplN)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKA
  N315            MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKA
  NCTC8325        MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKA
  Newman          MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKA
  USA300_FPR3757  MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKA
                  ************************************************************
  
  COL             VIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE
  N315            VIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE
  NCTC8325        VIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE
  Newman          VIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE
  USA300_FPR3757  VIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE
                  ************************************************************
  
  COL             VL
  N315            VL
  NCTC8325        VL
  Newman          VL
  USA300_FPR3757  VL
                  **