PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005682000
• symbol^?: secY
• synonym:
• description^?: preprotein translocase subunit SecY

  descriptions from strain specific annotations:

  • preprotein translocase subunit SecY
  • protein translocase subunit SecY
  • preprotein translocase, SecY subunit
  • Preprotein translocase secY subunit
  • Sec family Type I general secretory pathway preprotein translocase SecY_1
  • SecY protein
• strand^?: -
• coordinates^?: 5800823..5802153
• synteny block^?: BlockID0044280
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2219 (secY)
N315:
SA2028 (secY)
NCTC8325:
SAOUHSC_02491 (secY)
Newman:
NWMN_2132 (secY)
USA300_FPR3757:
SAUSA300_2184 (secY)
04-02981:
SA2981_2168 (secY)
08BA02176:
C248_2266 (secY)
11819-97:
MS7_2250 (secY)
6850:
RSAU_002066 (secY1)
71193:
ST398NM01_2283
ECT-R 2:
ECTR2_2092 (secY)
ED133:
SAOV_2267c
ED98:
SAAV_2292 (secY)
HO 5096 0412:
SAEMRSA15_21290 (secY)
JH1:
SaurJH1_2298 (secY)
JH9:
SaurJH9_2257 (secY)
JKD6008:
SAA6008_02267 (secY_1)
JKD6159:
SAA6159_02137 (secY_1)
LGA251:
SARLGA251_20160 (secY)
M013:
M013TW_2190
MRSA252:
SAR2315 (secY)
MSHR1132:
SAMSHR1132_20560
MSSA476:
SAS2121 (secY)
Mu3:
SAHV_2214 (secY)
Mu50:
SAV2230 (secY)
MW2:
MW2149 (secY)
RF122:
SAB2102c (secY)
ST398:
SAPIG2283
T0131:
SAT0131_02403
TCH60:
HMPREF0772_10968 (secY2)
TW20:
SATW20_23640 (secY)
USA300_TCH1516:
USA300HOU_2221 (secY)
VC40:
SAVC_10020 (secY)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
  N315            MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
  NCTC8325        MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
  Newman          MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
  USA300_FPR3757  MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
                  ************************************************************
  
  COL             GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
  N315            GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
  NCTC8325        GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
  Newman          GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
  USA300_FPR3757  GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
                  ************************************************************
  
  COL             LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
  N315            LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
  NCTC8325        LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
  Newman          LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
  USA300_FPR3757  LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
                  ************************************************************
  
  COL             SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
  N315            SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
  NCTC8325        SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
  Newman          SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
  USA300_FPR3757  SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
                  ************************************************************
  
  COL             IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
  N315            IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
  NCTC8325        IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
  Newman          IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
  USA300_FPR3757  IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
                  ************************************************************
  
  COL             NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
  N315            NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
  NCTC8325        NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
  Newman          NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
  USA300_FPR3757  NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
                  ************************************************************
  
  COL             KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
  N315            KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
  NCTC8325        KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
  Newman          KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
  USA300_FPR3757  KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
                  ************************************************************
  
  COL             QKEYKGFGGR
  N315            QKEYKGFGGR
  NCTC8325        QKEYKGFGGR
  Newman          QKEYKGFGGR
  USA300_FPR3757  QKEYKGFGGR
                  **********