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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005678000
- symbol?: rpsM
- synonym:
- description?: 30S ribosomal protein S13
- 30S ribosomal protein S13
- ribosomal protein S13p/S18e
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5799215..5799580
- synteny block?: BlockID0044240
- occurrence?: in 100% of 34 strains
rpsM : 30S ribosomal protein S13 [1]
• two crystal structures are available : 6YEF , 8BH6
Staphylococcal 30S ribosomal protein S13 is also known as "uS13" by the universal ribosomal protein nomenclature harmonization system. [2]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2164 (rpsM)
08BA02176:
C248_2262 (rpsM)
11819-97:
MS7_2246 (rpsM)
6850:
RSAU_002062 (rpsM)
71193:
ST398NM01_2279
ECT-R 2:
ECTR2_2088
ED133:
SAOV_2264c
ED98:
SAAV_2288 (rpsM)
HO 5096 0412:
SAEMRSA15_21250 (rpsM)
JH1:
SaurJH1_2294 (rpsM)
JH9:
SaurJH9_2253 (rpsM)
JKD6008:
SAA6008_02263 (rpsM)
JKD6159:
SAA6159_02133 (rpsM)
JSNZ:
JSNZ_002190 (rpsM)
LGA251:
SARLGA251_20120 (rpsM)
M013:
M013TW_2186
MRSA252:
SAR2311 (rpsM)
MSHR1132:
SAMSHR1132_20520
MSSA476:
SAS2117 (rpsM)
Mu3:
SAHV_2210 (rpsM)
Mu50:
SAV2226 (rpsM)
MW2:
MW2145 (rpsM)
RF122:
SAB2099c (rpsM)
ST398:
SAPIG2279 (rpsM)
T0131:
SAT0131_02399
TCH60:
HMPREF0772_10972 (rpsM)
TW20:
SATW20_23600 (rpsM)
USA300_TCH1516:
USA300HOU_2217 (rpsM)
VC40:
SAVC_10000 (rpsM)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVV
N315 MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVV
NCTC8325 MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVV
Newman MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVV
USA300_FPR3757 MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVV
************************************************************
COL DGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK
N315 DGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK
NCTC8325 DGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK
Newman DGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK
USA300_FPR3757 DGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK
************************************************************
COL K
N315 K
NCTC8325 K
Newman K
USA300_FPR3757 K
*
- ↑ Alexander Golubev, Bulat Fatkhullin, Iskander Khusainov, Lasse Jenner, Azat Gabdulkhakov, Shamil Validov, Gulnara Yusupova, Marat Yusupov, Konstantin Usachev
Cryo-EM structure of the ribosome functional complex of the human pathogen Staphylococcus aureus at 3.2 Å resolution.
FEBS Lett: 2020, 594(21);3551-3567
[PubMed:32852796] [WorldCat.org] [DOI] (I p) - ↑ Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton, Michael A McAlear, Peter B Moore, Harry F Noller, Joaquin Ortega, Vikram Govind Panse, V Ramakrishnan, Christian M T Spahn, Thomas A Steitz, Marek Tchorzewski, David Tollervey, Alan J Warren, James R Williamson, Daniel Wilson, Ada Yonath, Marat Yusupov
A new system for naming ribosomal proteins.
Curr Opin Struct Biol: 2014, 24;165-9
[PubMed:24524803] [WorldCat.org] [DOI] (I p)