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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005515000
- symbol?: trnaK
- synonym:
- description?: tRNA-Lys
- strand?: -
- coordinates?: 5677828..5677903
- synteny block?: BlockID0042960
- occurrence?: in 97% of 34 strains
tRNA-LysUUU
Modifications: [1] - (please note: this reference was unable to determine pseudouridine modifications)
• uridine(34) → 5-carboxymethylaminomethyl-2-thiouridine(34) - or - 5-methylaminomethyl-2-thiouridine(34)
• adenosine(37) → unknown modification(37)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to three lysyl-tRNA sequences, all three of which share the anticodon UUU. This tRNA-LysUUU (tRNA-LysUUU3) is from Locus VII; other tRNA-LysUUU can be found in in Locus II (tRNA-LysUUU1) and in Locus V (tRNA-LysUUU2).
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA58
08BA02176:
C248_2193 (trnaK)
11819-97:
MS7_2180
6850:
RSAU_002001
71193:
ST398NM01_r016
ECT-R 2:
ECTR2_2018
ED133:
SAOV_2204c
ED98:
SAAV_2219
HO 5096 0412:
SAEMRSA15_tRNA0056
JH1:
SaurJH1_R0073
JH9:
SaurJH9_R0073
JKD6008:
—
JKD6159:
SAA6159_t52
LGA251:
SARLGA251_t56
M013:
M013TW_2123
MRSA252:
SARt055
MSHR1132:
SAMSHR1132_t47
MSSA476:
SASt055
Mu3:
SAHV_t0056
Mu50:
SAVtRNA55
MW2:
MWtRNA55
RF122:
SAB_t55
ST398:
SAPIG2220
T0131:
SAT0131_t017
TCH60:
HMPREF0772_t10018
TW20:
SATW20_t550
USA300_TCH1516:
USA300HOU_t0055
VC40:
SAVC_t12575
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)