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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004822000
- symbol?: trnaK
- synonym:
- description?: tRNA-Lys
- strand?: -
- coordinates?: 5011573..5011645
- synteny block?: BlockID0037520
- occurrence?: in 100% of 34 strains
tRNA-LysUUU
Modifications: [1] - (please note: this reference was unable to determine pseudouridine modifications)
• uridine(34) → 5-carboxymethylaminomethyl-2-thiouridine(34) - or - 5-methylaminomethyl-2-thiouridine(34)
• adenosine(37) → unknown modification(37)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to three lysyl-tRNA sequences, all three of which share the anticodon UUU. This tRNA-LysUUU (tRNA-LysUUU2) is from Locus V; other tRNA-LysUUU can be found in in Locus II (tRNA-LysUUU1) and in Locus VII (tRNA-LysUUU3).
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA51
08BA02176:
C248_1926 (trnaK)
11819-97:
MS7_1888
6850:
RSAU_001741
71193:
ST398NM01_r021
ECT-R 2:
ECTR2_1726
ED133:
SAOV_1880c
ED98:
SAAV_1904
HO 5096 0412:
SAEMRSA15_tRNA0049
JH1:
SaurJH1_R0060
JH9:
SaurJH9_R0060
JKD6008:
SAA6008_t48
JKD6159:
SAA6159_t47
LGA251:
SARLGA251_t37
M013:
M013TW_1887
MRSA252:
SARt048
MSHR1132:
SAMSHR1132_t40
MSSA476:
SASt048
Mu3:
SAHV_t0049
Mu50:
SAVtRNA48
MW2:
MWtRNA48
RF122:
SAB_t47
ST398:
SAPIG1949
T0131:
SAT0131_t022
TCH60:
HMPREF0772_t10025
TW20:
SATW20_t480
USA300_TCH1516:
USA300HOU_t0048
VC40:
SAVC_t12561
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)