PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005400000
• symbol^?: atpB
• synonym:
• description^?: F0F1 ATP synthase subunit A

  descriptions from strain specific annotations:

  • F0F1 ATP synthase subunit A
  • ATP synthase subunit A
  • ATP synthase F0F1 subunit A
  • ATP synthase FO, subunit A
  • ATP synthase A chain
  • ATP synthase F0, A subunit
  • ATP synthase F0 subunit A
  • ATP synthase subunit alpha, AtpA_1
• strand^?: -
• coordinates^?: 5561422..5562150
• synteny block^?: BlockID0041960
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2101 (atpB)
N315:
SA1911 (atpB)
NCTC8325:
SAOUHSC_02350
Newman:
NWMN_2013 (atpB)
USA300_FPR3757:
SAUSA300_2064 (atpB)
04-02981:
SA2981_2049 (atpB)
08BA02176:
C248_2123 (atpB)
11819-97:
MS7_2125 (atpB)
6850:
RSAU_001947 (atpB)
71193:
ST398NM01_2151
ECT-R 2:
ECTR2_1965 (atpB)
ED133:
SAOV_2150c
ED98:
SAAV_2164 (atpB)
HO 5096 0412:
SAEMRSA15_20170 (atpB)
JH1:
SaurJH1_2183
JH9:
SaurJH9_2145
JKD6008:
SAA6008_02147 (atpA_1)
JKD6159:
SAA6159_02023 (atpA_1)
LGA251:
SARLGA251_19100 (atpB)
M013:
M013TW_2068
MRSA252:
SAR2197 (atpB)
MSHR1132:
SAMSHR1132_19320
MSSA476:
SAS2012
Mu3:
SAHV_2093 (atpB)
Mu50:
SAV2109 (atpB)
MW2:
MW2033 (atpB)
RF122:
SAB1993c (atpB)
ST398:
SAPIG2151 (atpB)
T0131:
SAT0131_02271 (oppF)
TCH60:
HMPREF0772_11082 (atpB)
TW20:
SATW20_22470 (atpB)
USA300_TCH1516:
USA300HOU_2099 (atpB)
VC40:
SAVC_09420

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRNLKKRPTGKQNFVEWIF
  N315            MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRNLKKRPTGKQNFVEWIF
  NCTC8325        MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRNLKKRPTGKQNFVEWIF
  Newman          MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRNLKKRPTGKQNFVEWIF
  USA300_FPR3757  MDHKSPLVSWNLFGFDIVFNLSSILMILVTAFLVFLLAIICTRNLKKRPTGKQNFVEWIF
                  ************************************************************
  
  COL             DFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSIVTKDHTLWWKSPTADATV
  N315            DFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSIVTKDHTLWWKSPTADATV
  NCTC8325        DFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSIVTKDHTLWWKSPTADATV
  Newman          DFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSIVTKDHTLWWKSPTADATV
  USA300_FPR3757  DFVRGIIEGNMAWKKGGQFHFLAVTLILYIFIANMLGLPFSIVTKDHTLWWKSPTADATV
                  ************************************************************
  
  COL             TLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIINVFEEFTSTLTLGLRLYGNIF
  N315            TLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIINVFEEFTSTLTLGLRLYGNIF
  NCTC8325        TLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIINVFEEFTSTLTLGLRLYGNIF
  Newman          TLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIINVFEEFTSTLTLGLRLYGNIF
  USA300_FPR3757  TLTLSTTIILLTHFYGIKMRGTKQYLKGYVQPFWPLAIINVFEEFTSTLTLGLRLYGNIF
                  ************************************************************
  
  COL             AGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFVGTIQAYIFIMLSMVYMSHKVAD
  N315            AGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFVGTIQAYIFIMLSMVYMSHKVAD
  NCTC8325        AGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFVGTIQAYIFIMLSMVYMSHKVAD
  Newman          AGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFVGTIQAYIFIMLSMVYMSHKVAD
  USA300_FPR3757  AGEILLTLLAGLFFNEPAWGWIISIPGLIVWQAFSIFVGTIQAYIFIMLSMVYMSHKVAD
                  ************************************************************
  
  COL             EH
  N315            EH
  NCTC8325        EH
  Newman          EH
  USA300_FPR3757  EH
                  **