PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005335000
• symbol^?: rsbV
• synonym:
• description^?: anti-sigma B factor antagonist

  descriptions from strain specific annotations:

  • anti-sigma B factor antagonist
  • anti-anti-sigma factor RsbV
  • anti-sigma-B factor, antagonist
  • anti-sigma B factor antagonist RsbV
  • anti-sigma factor antagonist
  • STAS domain-containing protein
  • anti-sigma-B factor antagonist (Anti-anti-sigma-B factor)
  • anti-sigma F factor antagonist
  • anti-sigma F factor antagonist (spoIIAA-2)
• strand^?: -
• coordinates^?: 5513223..5513549
• synteny block^?: BlockID0041320
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2056 (rsbV)
N315:
SA1871 (rsbV)
NCTC8325:
SAOUHSC_02300
Newman:
NWMN_1972 (rsbV)
USA300_FPR3757:
SAUSA300_2024 (rsbV)
04-02981:
SA2981_2007 (rsbV)
08BA02176:
C248_2077 (rsbV)
11819-97:
MS7_2083 (rsbV)
6850:
RSAU_001906 (rsbV)
71193:
ST398NM01_2107
ECT-R 2:
ECTR2_1922
ED133:
SAOV_2108c (rsbV)
ED98:
SAAV_2119 (rsbV)
HO 5096 0412:
SAEMRSA15_19760 (rsbV)
JH1:
SaurJH1_2140
JH9:
SaurJH9_2103
JKD6008:
SAA6008_02105 (rsbV)
JKD6159:
SAA6159_01981 (rsbV)
LGA251:
SARLGA251_18690 (rsbV)
M013:
M013TW_2025
MRSA252:
SAR2154 (rsbV)
MSHR1132:
SAMSHR1132_18910
MSSA476:
SAS1971
Mu3:
SAHV_2051 (rsbV)
Mu50:
SAV2066 (rsbV)
MW2:
MW1990 (rsbV)
RF122:
SAB1951c (rsbV)
ST398:
SAPIG2107
T0131:
SAT0131_02223
TCH60:
HMPREF0772_11129 (rsbV)
TW20:
SATW20_22060 (rsbV)
USA300_TCH1516:
USA300HOU_2061 (rsbV)
VC40:
SAVC_09210

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGL
  N315            MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGL
  NCTC8325        MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGL
  Newman          MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGL
  USA300_FPR3757  MNLNIETTTQDKFYEVKVGGELDVYTVPELEEVLTPMRQDGTRDIYVNLENVSYMDSTGL
                  ************************************************************
  
  COL             GLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE
  N315            GLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE
  NCTC8325        GLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE
  Newman          GLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE
  USA300_FPR3757  GLFVGTLKALNQNDKELYILGVSDRIGRLFEITGLKDLMHVNEGTEVE
                  ************************************************