PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005125000
• symbol^?: —
• synonym:
• description^?: XRE family transcriptional regulator

  descriptions from strain specific annotations:

  • XRE family transcriptional regulator
  • helix-turn-helix domain-containing protein
  • phage cI-like repressor
  • phi77 ORF011-like protein, phage transcriptional repressor
  • phage transcriptional regulator
  • CI-like repressor, phage associated
  • helix-turn-helix family protein
  • peptidase S24 S26A and S26B
  • phage repressor
  • Phage transcriptional repressor
  • putative phage repressor protein
  • repressor-like protein
  • transcription regulator
• strand^?: +
• coordinates^?: 5264707..5269215
• synteny block^?: BlockID0039780
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1805
NCTC8325:
SAOUHSC_01575
Newman:
NWMN_1921
USA300_FPR3757:
SAUSA300_1969
04-02981:
SA2981_1959
08BA02176:
—
11819-97:
MS7_2029
6850:
—
71193:
ST398NM01_1552
ECT-R 2:
ECTR2_1868
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_19200
JH1:
SaurJH1_2091
JH9:
SaurJH9_2054
JKD6008:
SAA6008_02051
JKD6159:
SAA6159_01932
LGA251:
—
M013:
—
MRSA252:
SAR2100
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1984
Mu50:
SAV1998
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02132
TCH60:
—
TW20:
SATW20_19950
USA300_TCH1516:
USA300HOU_2004
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVF
  NCTC8325        MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVF
  Newman          MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVF
  USA300_FPR3757  MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVF
                  ************************************************************
  
  N315            EVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEK
  NCTC8325        EVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEK
  Newman          EVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEK
  USA300_FPR3757  EVGKSDIDTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEK
                  ************************************************************
  
  N315            TPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEIIFVEKT
  NCTC8325        TPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEIIFVEKT
  Newman          TPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEIIFVEKT
  USA300_FPR3757  TPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKVNGDSMEPMFKDGEIIFVEKT
                  ************************************************************
  
  N315            HNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL
  NCTC8325        HNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL
  Newman          HNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL
  USA300_FPR3757  HNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL
                  *********************************************************