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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005000000
- symbol?: pmtR
- synonym:
- description?: GntR family transcriptional regulator
- GntR family transcriptional regulator
- GntR family regulatory protein
- GntR family (WHTH) transcriptional regulator
- bacterial regulatory s, gntR family protein
- regulatory protein GntR
- regulatory proteins, gntR family protein
- Transcriptional regulator, GntR family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5181377..5181757
- synteny block?: BlockID0038810
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1892
08BA02176:
C248_2021
11819-97:
MS7_1969
6850:
RSAU_001829
71193:
ST398NM01_2055
ECT-R 2:
ECTR2_1806
ED133:
SAOV_2036
ED98:
SAAV_2001
HO 5096 0412:
SAEMRSA15_18500
JH1:
SaurJH1_2024
JH9:
SaurJH9_1991
JKD6008:
SAA6008_01962
JKD6159:
SAA6159_01865
LGA251:
SARLGA251_18180
M013:
M013TW_1971
MRSA252:
SAR2026
MSHR1132:
SAMSHR1132_17780
MSSA476:
SAS1858
Mu3:
SAHV_1919
Mu50:
SAV1934
MW2:
MW1875
RF122:
SAB1870c
ST398:
SAPIG2055
T0131:
SAT0131_02064
TCH60:
HMPREF0772_11207
TW20:
SATW20_19280
USA300_TCH1516:
USA300HOU_1937
VC40:
SAVC_08930
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL -------------------------MKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEH
N315 -------------------------MKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEH
NCTC8325 -------------------------MKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEH
Newman MRHAYLQNCVYCVYCIYTEVDRGTLMKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEH
USA300_FPR3757 -------------------------MKIILKNNSDFPIYEQIKQQVKQNILKGHVAPGEH
***********************************
COL LPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENL
N315 LPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENL
NCTC8325 LPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENL
Newman LPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENL
USA300_FPR3757 LPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDSSILKEKQFFTIENL
************************************************************
COL VKELVNEAQAIEMSLEELQDILTFIYEEESS
N315 VKELVNEAQAIEMSLEELQDILTFIYEEESS
NCTC8325 VKELVNEAQAIEMSLEELQDILTFIYEEESS
Newman VKELVNEAQAIEMSLEELQDILTFIYEEESS
USA300_FPR3757 VKELVNEAQAIEMSLEELQDILTFIYEEESS
*******************************