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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004996000
- symbol?: pmtD
- synonym:
- description?: membrane protein
- membrane protein
- phenol-soluble modulin export ABC transporter permease subunit PmtD
- PSM ABC-transporter PmtD subunit
- ABC-2 transporter family protein
- ABC transporter permease
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5178194..5178934
- synteny block?: BlockID0038770
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1888
08BA02176:
C248_2017
11819-97:
MS7_1965
6850:
RSAU_001825 (pmtD)
71193:
ST398NM01_2051
ECT-R 2:
ECTR2_1802
ED133:
SAOV_2032
ED98:
SAAV_1997
HO 5096 0412:
SAEMRSA15_18460
JH1:
SaurJH1_2020
JH9:
SaurJH9_1987
JKD6008:
SAA6008_01966
JKD6159:
SAA6159_01861
LGA251:
SARLGA251_18140
M013:
M013TW_1967
MRSA252:
SAR2022
MSHR1132:
SAMSHR1132_17740
MSSA476:
SAS1854
Mu3:
SAHV_1915
Mu50:
SAV1930
MW2:
MW1871
RF122:
SAB1866c
ST398:
SAPIG2051
T0131:
SAT0131_02060
TCH60:
HMPREF0772_11211
TW20:
SATW20_19240
USA300_TCH1516:
USA300HOU_1933
VC40:
SAVC_08910
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRILNLVKYDFYSIFKSPLTYLAILVVSSLIATQSILMANSMDNPKHIIVYGSVFAAAKW
N315 MRILNLVKYDFYSIFKSPLTYLAILVVSSLIATQSILMANSMDNPKHIIVYGSVFAAAKW
NCTC8325 MRILNLVKYDFYSIFKSPLTYLAILVVSSLIATQSILMANSMDNPKHIIVYGSVFAAAKW
Newman MRILNLVKYDFYSIFKSPLTYLAILVVSSLIATQSILMANSMDNPKHIIVYGSVFAAAKW
USA300_FPR3757 MRILNLVKYDFYSIFKSPLTYLAILVVSSLIATQSILMANSMDNPKHIIVYGSVFAAAKW
************************************************************
COL LLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILI
N315 LLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILI
NCTC8325 LLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILI
Newman LLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILI
USA300_FPR3757 LLLIIGLMFVVKTITRDFSQGTIQLYMSKVKTRVGYIISKTISIILISILFALIHYVILI
************************************************************
COL VVQASSNGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPF
N315 VVQASSNGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPF
NCTC8325 VVQASSNGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPF
Newman VVQASSNGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPF
USA300_FPR3757 VVQASSNGKNLAFSKYVDNLWFFLIFLLFFGLFLFLITLASQKTAMIFSLGVFLVLIVPF
************************************************************
COL IKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDFSNWQWVISLGSIVIFFILNILY
N315 IKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDFSNWQWVISLGSIVIFFILNILY
NCTC8325 IKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDFSNWQWVISLGSIVIFFILNILY
Newman IKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDFSNWQWVISLGSIVIFFILNILY
USA300_FPR3757 IKPFITFIPRYGEKVLDAFDYIPFAYLTDKMISSNFDFSNWQWVISLGSIVIFFILNILY
************************************************************
COL VAKKDI
N315 VAKKDI
NCTC8325 VAKKDI
Newman VAKKDI
USA300_FPR3757 VAKKDI
******