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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004823000
- symbol?: trnaT
- synonym:
- description?: tRNA-Thr
- tRNA-Thr
- tRNA-Val
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5011654..5011726
- synteny block?: BlockID0037530
- occurrence?: in 100% of 34 strains
tRNA-ThrUGU
Modifications: [1] - (please note: this reference was unable to determine pseudouridine modifications)
• uridine(17) → dihydrouridine(17)
• uridine(20a) → dihydrouridine(20a)
• uridine(20b) → dihydrouridine(20b)
• uridine(34) → 5-methoxyuridine(34)
• adenosine(37) → N(6)-threonylcarbamoyladenosine(37)
• uridine(54) → thymidine(54)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to three threonyl-tRNA sequences, all three of which share the anticodon UGU. This tRNA-ThrUGU (tRNA-ThrUGU2) is from Locus V; other tRNA-ThrUGU can be found in in Locus II (tRNA-ThrUGU1) and elsewhere in Locus V (tRNA-ThrUGU3).
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA52
08BA02176:
C248_1927 (trnaT)
11819-97:
MS7_1889
6850:
RSAU_001742
71193:
ST398NM01_r020
ECT-R 2:
ECTR2_1727
ED133:
SAOV_1881c
ED98:
SAAV_1905
HO 5096 0412:
SAEMRSA15_tRNA0050
JH1:
SaurJH1_R0061
JH9:
SaurJH9_R0061
JKD6008:
SAA6008_t49
JKD6159:
SAA6159_t48
JSNZ:
JSNZ_001882
LGA251:
SARLGA251_t39
M013:
M013TW_1888
MRSA252:
SARt049
MSHR1132:
SAMSHR1132_t41
MSSA476:
SASt049
Mu3:
SAHV_t0050
Mu50:
SAVtRNA49
MW2:
MWtRNA49
RF122:
SAB_t48
ST398:
SAPIG1950
T0131:
SAT0131_t021
TCH60:
HMPREF0772_t10024
TW20:
SATW20_t490
USA300_TCH1516:
USA300HOU_t0049
VC40:
SAVC_t12563
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)