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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004807000
- symbol?: trnaT
- synonym:
- description?: tRNA-Thr
- strand?: -
- coordinates?: 5010181..5010253
- synteny block?: BlockID0037370
- occurrence?: in 100% of 34 strains
tRNA-ThrUGU
Modifications: [1] - (please note: this reference was unable to determine pseudouridine modifications)
• uridine(17) → dihydrouridine(17)
• uridine(20a) → dihydrouridine(20a)
• uridine(20b) → dihydrouridine(20b)
• uridine(34) → 5-methoxyuridine(34)
• adenosine(37) → N(6)-threonylcarbamoyladenosine(37)
• uridine(54) → thymidine(54)
Transfer RNA coding elements are organized in up to eleven loci in Staphylococcus aureus. Staphylococci encode up to three threonyl-tRNA sequences, all three of which share the anticodon UGU. This tRNA-ThrUGU (tRNA-ThrUGU3) is from Locus V; other tRNA-ThrUGU can be found in in Locus II (tRNA-ThrUGU1) and elsewhere in Locus V (tRNA-ThrUGU2).
⊟Orthologs[edit | edit source]
04-02981:
SA2981_tRNA36
08BA02176:
C248_1911 (trnaT)
11819-97:
MS7_1873
6850:
RSAU_001726
71193:
ST398NM01_r034
ECT-R 2:
ECTR2_1711
ED133:
SAOV_1865c
ED98:
SAAV_1890
HO 5096 0412:
SAEMRSA15_tRNA0034
JH1:
SaurJH1_R0045
JH9:
SaurJH9_R0045
JKD6008:
SAA6008_t32
JKD6159:
SAA6159_t32
JSNZ:
JSNZ_001866
LGA251:
SARLGA251_t38
M013:
M013TW_1873
MRSA252:
SARt033
MSHR1132:
SAMSHR1132_t25
MSSA476:
SASt033
Mu3:
SAHV_t0034
Mu50:
SAVtRNA33
MW2:
MWtRNA33
RF122:
SAB_t32
ST398:
SAPIG1934
T0131:
SAT0131_t035
TCH60:
HMPREF0772_t10040
TW20:
SATW20_t320
USA300_TCH1516:
USA300HOU_t0033
VC40:
SAVC_t12531
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ Laura Antoine, Philippe Wolff, Eric Westhof, Pascale Romby, Stefano Marzi
Mapping post-transcriptional modifications in Staphylococcus aureus tRNAs by nanoLC/MSMS.
Biochimie: 2019, 164;60-69
[PubMed:31295507] [WorldCat.org] [DOI] (I p)