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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004780000
- symbol?: —
- synonym:
- description?: transcriptional regulator
- transcriptional regulator
- helix-turn-helix transcriptional regulator
- transcriptional regulator, putative
- cro/CI family transcriptional regulator
- DNA-binding protein
- helix-turn-helix domain protein
- helix-turn-helix family protein
- HTH domain protein, binds to mecA promoter region
- pbsX family transcriptional regulator
- putative DNA-binding protein
- XRE family transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4990249..4990713
- synteny block?: BlockID0037120
- occurrence?: in 100% of 34 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1803
08BA02176:
C248_1890
11819-97:
MS7_1852
6850:
RSAU_001706
71193:
ST398NM01_1913
ECT-R 2:
ECTR2_1689
ED133:
SAOV_1844
ED98:
SAAV_1866
HO 5096 0412:
SAEMRSA15_17520
JH1:
SaurJH1_1935
JH9:
SaurJH9_1901
JKD6008:
SAA6008_01804
JKD6159:
SAA6159_01775
LGA251:
SARLGA251_17300
M013:
M013TW_1853
MRSA252:
SAR1938
MSHR1132:
SAMSHR1132_16930
MSSA476:
SAS1768
Mu3:
SAHV_1832
Mu50:
SAV1847
MW2:
MW1788
RF122:
SAB1780c
ST398:
SAPIG1913
T0131:
SAT0131_01967
TCH60:
HMPREF0772_11297
TW20:
SATW20_18410
USA300_TCH1516:
USA300HOU_1841
VC40:
SAVC_08475
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 | |
| JSNZ |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCISICAL
N315 MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCISICAL
NCTC8325 MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCISICAL
Newman MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCISICAL
USA300_FPR3757 MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCISICAL
************************************************************
COL FRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNNIETRNGYILQSNKVSNIY
N315 FRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNNIETRNGYILQSNKVSNIY
NCTC8325 FRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNNIETRNGYILQSNKVSNIY
Newman FRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNNIETRNGYILQSNKVSNIY
USA300_FPR3757 FRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNNIETRNGYILQSNKVSNIY
************************************************************
COL RVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI
N315 RVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI
NCTC8325 RVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI
Newman RVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI
USA300_FPR3757 RVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI
**********************************