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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004500000
- symbol?: smdA
- synonym:
- description?: NERD domain-containing protein
- NERD domain-containing protein
- exported protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4732058..4732966
- synteny block?: BlockID0034910
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1744
08BA02176:
C248_1833
11819-97:
MS7_1788
6850:
RSAU_001642
71193:
ST398NM01_1837
ECT-R 2:
ECTR2_1624
ED133:
SAOV_1770
ED98:
SAAV_1798
HO 5096 0412:
SAEMRSA15_16970
JH1:
SaurJH1_1876
JH9:
SaurJH9_1840
JKD6008:
SAA6008_01764
JKD6159:
SAA6159_01707
LGA251:
SARLGA251_16730
M013:
M013TW_1799
MRSA252:
SAR1869
MSHR1132:
SAMSHR1132_16340
MSSA476:
SAS1710
Mu3:
SAHV_1774
Mu50:
SAV1789
MW2:
MW1727
RF122:
SAB1644c
ST398:
SAPIG1837
T0131:
SAT0131_01903
TCH60:
HMPREF0772_11367
TW20:
SATW20_17780
USA300_TCH1516:
USA300HOU_1776
VC40:
SAVC_08155
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL -MDLSSPIVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE
N315 MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE
NCTC8325 -MDLSSPIVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE
Newman -MDLSSPIVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE
USA300_FPR3757 -MDLSSPIVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALE
******:****************************************************
COL KERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRI
N315 KERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRI
NCTC8325 KERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRI
Newman KERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRI
USA300_FPR3757 KERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRI
************************************************************
COL RPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPP
N315 RPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPP
NCTC8325 RPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPP
Newman RPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPP
USA300_FPR3757 RPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPP
************************************************************
COL MEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTS
N315 MEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTS
NCTC8325 MEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTS
Newman MEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTS
USA300_FPR3757 MEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTS
************************************************************
COL ILYFNLKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIE
N315 ILYFNPKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIE
NCTC8325 ILYFNLKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIE
Newman ILYFNLKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIE
USA300_FPR3757 ILYFNLKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIE
***** ******************************************************
COL SFN
N315 SFN
NCTC8325 SFN
Newman SFN
USA300_FPR3757 SFN
***