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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1607 [new locus tag: SA_RS09050 ]
  • pan locus tag?: SAUPAN004500000
  • symbol: SA1607
  • pan gene symbol?: smdA
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1607 [new locus tag: SA_RS09050 ]
  • symbol: SA1607
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1842185..1843096
  • length: 912
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGATGGATTTATCTTCACCGGTAGTCATTGGACTCATTATTGCAGTAGTCATTGCATTA
    ATCTTTTTTGTCCTTTTCTTAGTTGCCTTAGGTAGTAAGAAAAAAGTTAAGCGACAAACA
    GAAGAAAAGTATGAACAACAAGAACAAAACATTAAAAAGTCTCATGAAGAAGCTTTAGAG
    AAAGAGCGTATTCAAAATAAAAAGACAATTACAAAACAACAAGAAGATTATAATCACATG
    GTTAGTACAAAAGATCGTGAGATTGACGCATTAAAATTGTTCTCGAAAAATCATAGTGAA
    TATGTAACGGACATGAGATTAATTGGTATTCGTGAAAGATTAGTTAAAGAAAAACGAATT
    CGACCAGAAGATATGCACATTATGGCAAATATCTTTTTACCAAAGGATGGCTTTAATAAT
    ATTGAACGAATTAGTCATTTAGTATTAACAAGAACTGGTCTTTATATTATTGATTCTCAA
    TTGTTAAAAGGTCATGTTTATAATGGTATTAGTGGCGGTCAATTTAAAGATTTACCACCA
    ATGGAACAAGTATTTGATACATTGGATTTAGATAAATCTAGACCACAAACTATTGTGATG
    GATCAAAATGATGACAAACGTTCATTATCTTTTGTAAATTATTCAGATCAAATTGAGGCG
    ATTAAACAATTGGCTGAAGACTTACAAAAAGAATTAGGTGCCAAATATACGCCAACTTCA
    ATTTTATACTTTAATCCTAAAAATGAAGGCGATGTAACGATTTCAAATTATAATCAAAAT
    AGTGCTGTCAAAGTGCTTGTCGGTGCTGAACAATTAGACGAGTTCTTTAACAAATTTGTA
    TTCCATGGTCGTATTCAATACAACGTGGAAGACTTACAACAAATGATGGATAAAATTGAA
    TCATTCAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    912

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1607 [new locus tag: SA_RS09050 ]
  • symbol: SA1607
  • description: hypothetical protein
  • length: 303
  • theoretical pI: 6.41787
  • theoretical MW: 35154.1
  • GRAVY: -0.468647

⊟Function[edit | edit source]

  • TIGRFAM:
    cardiolipin synthase (TIGR04265; EC 2.7.8.-; HMM-score: 15.1)
    Metabolism Transport and binding proteins Unknown substrate efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family (TIGR00921; HMM-score: 12.3)
    and 6 more
    Metabolism Transport and binding proteins Nucleosides, purines and pyrimidines nucleoside Transporter (TIGR00939; HMM-score: 12)
    Cellular processes Cellular processes Sporulation and germination transcription factor, RsfA family (TIGR02894; HMM-score: 11.6)
    Signal transduction Regulatory functions DNA interactions transcription factor, RsfA family (TIGR02894; HMM-score: 11.6)
    Unknown function General TIGR00374 family protein (TIGR00374; HMM-score: 11.3)
    Cellular processes Cellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 9.7)
    Metabolism Energy metabolism Methanogenesis tetrahydromethanopterin S-methyltransferase, subunit B (TIGR04166; EC 2.1.1.86; HMM-score: 8.3)
  • TheSEED  :
    • Hypothetical protein SAV1789
  • PFAM:
    PDDEXK (CL0236) NERD; Nuclease-related domain (PF08378; HMM-score: 26.8)
    no clan defined DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 26.6)
    and 32 more
    DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 21.4)
    MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 (PF15807; HMM-score: 18)
    SecD-TM1; SecD export protein N-terminal TM region (PF13721; HMM-score: 17)
    IncA; IncA protein (PF04156; HMM-score: 16.8)
    DUF2681; Protein of unknown function (DUF2681) (PF10883; HMM-score: 16.8)
    Tmemb_9; TMEM9 (PF05434; HMM-score: 16.6)
    DUF3365; Protein of unknown function (DUF3365) (PF11845; HMM-score: 16.3)
    CLN3; CLN3 protein (PF02487; HMM-score: 16.2)
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal (PF13299; HMM-score: 15.9)
    Cadherin_C_2; Cadherin cytoplasmic C-terminal (PF16492; HMM-score: 15.9)
    TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit (PF03896; HMM-score: 15.1)
    FAM176; FAM176 family (PF14851; HMM-score: 15)
    ArsP_1; Predicted permease (PF03773; HMM-score: 14.7)
    GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 14.5)
    no clan defined EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 14.3)
    DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 14.2)
    MMM1; Maintenance of mitochondrial morphology protein 1 (PF10296; HMM-score: 14.1)
    DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 14.1)
    Oxa1 (CL0376) DUF106; Integral membrane protein DUF106 (PF01956; HMM-score: 13.9)
    DMT (CL0184) CSG2; Ceramide synthase regulator (PF16965; HMM-score: 13.5)
    no clan defined DUF2570; Protein of unknown function (DUF2570) (PF10828; HMM-score: 13)
    Baculo_11_kDa; Baculovirus 11 kDa family (PF06143; HMM-score: 12.9)
    DUF3169; Protein of unknown function (DUF3169) (PF11368; HMM-score: 12.4)
    DUF4006; Family of unknown function (DUF4006) (PF13179; HMM-score: 12.3)
    LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 12.2)
    O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 12.2)
    BPD_transp_1 (CL0404) YjgP_YjgQ; Predicted permease YjgP/YjgQ family (PF03739; HMM-score: 12)
    TPR (CL0020) HemY_N; HemY protein N-terminus (PF07219; HMM-score: 12)
    no clan defined DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 11.6)
    Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 11.2)
    Hybrid (CL0105) DUF2254; Predicted membrane protein (DUF2254) (PF10011; HMM-score: 10.5)
    MFS (CL0015) OATP; Organic Anion Transporter Polypeptide (OATP) family (PF03137; HMM-score: 9.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012726
    • TAT(Tat/SPI): 0.000661
    • LIPO(Sec/SPII): 0.09491
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALEKERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRIRPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPPMEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTSILYFNPKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIESFN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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