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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1607 [new locus tag: SA_RS09050 ]
- pan locus tag?: SAUPAN004500000
- symbol: SA1607
- pan gene symbol?: smdA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1607 [new locus tag: SA_RS09050 ]
- symbol: SA1607
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1842185..1843096
- length: 912
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1124451 NCBI
- RefSeq: NP_374896 NCBI
- BioCyc: see SA_RS09050
- MicrobesOnline: 103922 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901GTGATGGATTTATCTTCACCGGTAGTCATTGGACTCATTATTGCAGTAGTCATTGCATTA
ATCTTTTTTGTCCTTTTCTTAGTTGCCTTAGGTAGTAAGAAAAAAGTTAAGCGACAAACA
GAAGAAAAGTATGAACAACAAGAACAAAACATTAAAAAGTCTCATGAAGAAGCTTTAGAG
AAAGAGCGTATTCAAAATAAAAAGACAATTACAAAACAACAAGAAGATTATAATCACATG
GTTAGTACAAAAGATCGTGAGATTGACGCATTAAAATTGTTCTCGAAAAATCATAGTGAA
TATGTAACGGACATGAGATTAATTGGTATTCGTGAAAGATTAGTTAAAGAAAAACGAATT
CGACCAGAAGATATGCACATTATGGCAAATATCTTTTTACCAAAGGATGGCTTTAATAAT
ATTGAACGAATTAGTCATTTAGTATTAACAAGAACTGGTCTTTATATTATTGATTCTCAA
TTGTTAAAAGGTCATGTTTATAATGGTATTAGTGGCGGTCAATTTAAAGATTTACCACCA
ATGGAACAAGTATTTGATACATTGGATTTAGATAAATCTAGACCACAAACTATTGTGATG
GATCAAAATGATGACAAACGTTCATTATCTTTTGTAAATTATTCAGATCAAATTGAGGCG
ATTAAACAATTGGCTGAAGACTTACAAAAAGAATTAGGTGCCAAATATACGCCAACTTCA
ATTTTATACTTTAATCCTAAAAATGAAGGCGATGTAACGATTTCAAATTATAATCAAAAT
AGTGCTGTCAAAGTGCTTGTCGGTGCTGAACAATTAGACGAGTTCTTTAACAAATTTGTA
TTCCATGGTCGTATTCAATACAACGTGGAAGACTTACAACAAATGATGGATAAAATTGAA
TCATTCAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1607 [new locus tag: SA_RS09050 ]
- symbol: SA1607
- description: hypothetical protein
- length: 303
- theoretical pI: 6.41787
- theoretical MW: 35154.1
- GRAVY: -0.468647
⊟Function[edit | edit source]
- TIGRFAM: cardiolipin synthase (TIGR04265; EC 2.7.8.-; HMM-score: 15.1)Transport and binding proteins Unknown substrate efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family (TIGR00921; HMM-score: 12.3)and 6 moreTransport and binding proteins Nucleosides, purines and pyrimidines nucleoside Transporter (TIGR00939; HMM-score: 12)Cellular processes Sporulation and germination transcription factor, RsfA family (TIGR02894; HMM-score: 11.6)Regulatory functions DNA interactions transcription factor, RsfA family (TIGR02894; HMM-score: 11.6)Unknown function General TIGR00374 family protein (TIGR00374; HMM-score: 11.3)Cellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 9.7)Energy metabolism Methanogenesis tetrahydromethanopterin S-methyltransferase, subunit B (TIGR04166; EC 2.1.1.86; HMM-score: 8.3)
- TheSEED :
- Hypothetical protein SAV1789
- PFAM: PDDEXK (CL0236) NERD; Nuclease-related domain (PF08378; HMM-score: 26.8)no clan defined DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 26.6)and 32 moreDUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 21.4)MAP17; Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 (PF15807; HMM-score: 18)SecD-TM1; SecD export protein N-terminal TM region (PF13721; HMM-score: 17)IncA; IncA protein (PF04156; HMM-score: 16.8)DUF2681; Protein of unknown function (DUF2681) (PF10883; HMM-score: 16.8)Tmemb_9; TMEM9 (PF05434; HMM-score: 16.6)DUF3365; Protein of unknown function (DUF3365) (PF11845; HMM-score: 16.3)CLN3; CLN3 protein (PF02487; HMM-score: 16.2)CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal (PF13299; HMM-score: 15.9)Cadherin_C_2; Cadherin cytoplasmic C-terminal (PF16492; HMM-score: 15.9)TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit (PF03896; HMM-score: 15.1)FAM176; FAM176 family (PF14851; HMM-score: 15)ArsP_1; Predicted permease (PF03773; HMM-score: 14.7)GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 14.5)no clan defined EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 14.3)DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 14.2)MMM1; Maintenance of mitochondrial morphology protein 1 (PF10296; HMM-score: 14.1)DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 14.1)Oxa1 (CL0376) DUF106; Integral membrane protein DUF106 (PF01956; HMM-score: 13.9)DMT (CL0184) CSG2; Ceramide synthase regulator (PF16965; HMM-score: 13.5)no clan defined DUF2570; Protein of unknown function (DUF2570) (PF10828; HMM-score: 13)Baculo_11_kDa; Baculovirus 11 kDa family (PF06143; HMM-score: 12.9)DUF3169; Protein of unknown function (DUF3169) (PF11368; HMM-score: 12.4)DUF4006; Family of unknown function (DUF4006) (PF13179; HMM-score: 12.3)LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 12.2)O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 12.2)BPD_transp_1 (CL0404) YjgP_YjgQ; Predicted permease YjgP/YjgQ family (PF03739; HMM-score: 12)TPR (CL0020) HemY_N; HemY protein N-terminus (PF07219; HMM-score: 12)no clan defined DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 11.6)Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 11.2)Hybrid (CL0105) DUF2254; Predicted membrane protein (DUF2254) (PF10011; HMM-score: 10.5)MFS (CL0015) OATP; Organic Anion Transporter Polypeptide (OATP) family (PF03137; HMM-score: 9.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0.5
- N-terminally Anchored Score: 4
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.012726
- TAT(Tat/SPI): 0.000661
- LIPO(Sec/SPII): 0.09491
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMDLSSPVVIGLIIAVVIALIFFVLFLVALGSKKKVKRQTEEKYEQQEQNIKKSHEEALEKERIQNKKTITKQQEDYNHMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRIRPEDMHIMANIFLPKDGFNNIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPPMEQVFDTLDLDKSRPQTIVMDQNDDKRSLSFVNYSDQIEAIKQLAEDLQKELGAKYTPTSILYFNPKNEGDVTISNYNQNSAVKVLVGAEQLDEFFNKFVFHGRIQYNVEDLQQMMDKIESFN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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