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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004431000
- symbol?: —
- synonym:
- description?: 16S rRNA pseudouridine(516) synthase
- 16S rRNA pseudouridine(516) synthase
- pseudouridine synthase, putative
- pseudouridine synthase 1 protein
- pseudouridine synthase family 1 protein
- ribosomal small subunit pseudouridine synthase A
- rRNA pseudouridine synthase
- pseudouridine synthase
- 16S pseudouridine synthase A
- 16S pseudouridylate synthase
- 16S RNA pseudouridylate synthase
- pseudouridine synthase, family 1
- pseudouridine synthase family protein
- RNA pseudouridine synthase
- RNA pseudouridine synthase family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4678420..4679115
- synteny block?: BlockID0034290
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1711
08BA02176:
C248_1800
11819-97:
MS7_1759
6850:
RSAU_001610 (rsuA)
71193:
ST398NM01_1806
ECT-R 2:
ECTR2_1593
ED133:
SAOV_1739
ED98:
SAAV_1763
HO 5096 0412:
SAEMRSA15_16610
JH1:
SaurJH1_1843
JH9:
SaurJH9_1808
JKD6008:
SAA6008_01725 (rsuA)
JKD6159:
SAA6159_01676 (rsuA)
LGA251:
SARLGA251_16430
M013:
M013TW_1768
MRSA252:
SAR1838
MSHR1132:
SAMSHR1132_16030
MSSA476:
SAS1679
Mu3:
SAHV_1739
Mu50:
SAV1753
MW2:
MW1696
RF122:
SAB1613c
ST398:
SAPIG1806
T0131:
SAT0131_01862
TCH60:
HMPREF0772_11399 (rsuA)
TW20:
SATW20_17430
USA300_TCH1516:
USA300HOU_1744 (rsuA)
VC40:
SAVC_07975
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN
N315 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN
NCTC8325 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN
Newman MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN
USA300_FPR3757 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN
************************************************************
COL VYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHE
N315 VYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHE
NCTC8325 VYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHE
Newman VYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHE
USA300_FPR3757 VYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHE
************************************************************
COL LMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGK
N315 LMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGK
NCTC8325 LMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGK
Newman LMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGK
USA300_FPR3757 LMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGK
************************************************************
COL YHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
N315 YHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
NCTC8325 YHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
Newman YHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
USA300_FPR3757 YHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
***************************************************