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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004405000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- Maebl
- smooth muscle caldesmon
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4645551..4648339
- synteny block?: BlockID0034090
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1696
08BA02176:
C248_1783
11819-97:
MS7_1744
6850:
RSAU_001594
71193:
ST398NM01_1791
ECT-R 2:
ECTR2_1578
ED133:
SAOV_1724
ED98:
SAAV_1748
HO 5096 0412:
SAEMRSA15_16460
JH1:
SaurJH1_1828
JH9:
SaurJH9_1793
JKD6008:
SAA6008_01709
JKD6159:
SAA6159_01661
LGA251:
SARLGA251_16280
M013:
M013TW_1752
MRSA252:
SAR1816
MSHR1132:
SAMSHR1132_15880
MSSA476:
SAS1664
Mu3:
SAHV_1724
Mu50:
SAV1738
MW2:
MW1681
RF122:
SAB1598c
ST398:
SAPIG1791
T0131:
SAT0131_01846
TCH60:
HMPREF0772_11415
TW20:
SATW20_17280
USA300_TCH1516:
USA300HOU_1728
VC40:
SAVC_07900
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
N315 MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
NCTC8325 MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
Newman MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
USA300_FPR3757 MTQQQNDKRTLKNKHTYQNEPLPNRKDFVVSFITGALVGSALGLYFKNKVYQKADDLKVK
************************************************************
COL EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
N315 EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
NCTC8325 EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
Newman EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
USA300_FPR3757 EQELSQKFEERKTQLEETVAYTKERVEGFLNKSKNEQAALKAQQAAIKEEASANNLSDTS
************************************************************
COL QEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAIKEEASANNLSDTSQEAQEIQ
N315 QEAQEIQEAKREAQAEADKSVAVSNEESKASALKVQQAAIKEEASANNLSDTSQEAQEI-
NCTC8325 QEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAIKEEASANNLSDTSQEAQEIQ
Newman QEAQEIQEAKREAQAEADKSVAVSNKESKAVALKAQQAAIKEEASANNLSDTSQEAQEIQ
USA300_FPR3757 QEAQEI------------------------------------------------------
******
COL EAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQ
N315 ----------------------------------------------------QEAKKEAQ
NCTC8325 EAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQ
Newman EAKKEAQAETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQ
USA300_FPR3757 ----------------------------------------------------QEAKKEAQ
********
COL AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
N315 AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDTSQEAQEVQEAKKEAQAEKDSDT
NCTC8325 AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
Newman AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
USA300_FPR3757 AETDKSAAVSNEEPKAVALKAQQAAIKEEASANNLSDISQEAQEVQEAKKEAQAEKDSDT
************************************* **********************
COL LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
N315 STKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
NCTC8325 LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
Newman LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
USA300_FPR3757 LTKDASAAKVEVSKPESQAERLANAAKQKQAKLTPGSKESQLTEALFAEKPVAKNDLKEI
***********************************************************
COL PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
N315 PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
NCTC8325 PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
Newman PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
USA300_FPR3757 PQLVTKKNDVSETETVNIDNKDTVKQKEAKFENGVITRKADEKTTNNTAVDKKSGKQSKK
************************************************************
COL TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
N315 TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKLTQKNNQTSNKNSKTTNAKS
NCTC8325 TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
Newman TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
USA300_FPR3757 TTPSNKRNASKASTNKTSGQKKQHNKKSSQGAKKQSSSSKSTQKNNQTSNKNSKTTNAKS
**************************************** *******************
COL SNASKTPNAKVEKAKSKIEKRTFND
N315 SNASKTPNAKVEKANSKIEKRTFND
NCTC8325 SNASKTPNAKVEKAKSKIEKRTFND
Newman SNASKTPNAKVEKAKSKIEKRTFND
USA300_FPR3757 SNASKTPNAKVEKAKSKIEKRTFND
**************:**********