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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004371000
- symbol?: —
- synonym:
- description?: GAF domain-containing protein
- GAF domain-containing protein
- GAF domain protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4611402..4611866
- synteny block?: BlockID0033760
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1677
08BA02176:
C248_1759
11819-97:
MS7_1725
6850:
RSAU_001575
71193:
ST398NM01_1771
ECT-R 2:
ECTR2_1559
ED133:
SAOV_1705
ED98:
SAAV_1729
HO 5096 0412:
SAEMRSA15_16270
JH1:
SaurJH1_1809
JH9:
SaurJH9_1774
JKD6008:
SAA6008_01687
JKD6159:
SAA6159_01642
LGA251:
SARLGA251_16090
M013:
M013TW_1731
MRSA252:
SAR1796
MSHR1132:
SAMSHR1132_15680
MSSA476:
SAS1645
Mu3:
SAHV_1704
Mu50:
SAV1718
MW2:
MW1661
RF122:
SAB1577
ST398:
SAPIG1771
T0131:
SAT0131_01822
TCH60:
HMPREF0772_11434
TW20:
SATW20_17090
USA300_TCH1516:
USA300HOU_1706
VC40:
SAVC_07800
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILG
N315 MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLNQINWVGFYLLEQNELILG
NCTC8325 MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILG
Newman MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILG
USA300_FPR3757 MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILG
*****************************************:******************
COL PFQGHPACVHIPIGKGVCGTAVSERRTQIVADVHQFEGHIACDANSKSEIVVPIFKDDKI
N315 PFQGHPACVHIPIGKGVCGTAVSERRTQVVADVHQFEGHIACDANSKSEIVVPIFKDDKI
NCTC8325 PFQGHPACVHIPIGKGVCGTAVSERRTQIVADVHQFEGHIACDANSKSEIVVPIFKDDKI
Newman PFQGHPACVHIPIGKGVCGTAVSERRTQIVADVHQFEGHIACDANSKSEIVVPIFKDDKI
USA300_FPR3757 PFQGHPACVHIPIGKGVCGTAVSERRTQIVADVHQFEGHIACDANSKSEIVVPIFKDDKI
****************************:*******************************
COL IGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA
N315 IGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA
NCTC8325 IGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA
Newman IGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA
USA300_FPR3757 IGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA
**********************************