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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1540 [new locus tag: SA_RS08670 ]
  • pan locus tag?: SAUPAN004371000
  • symbol: SA1540
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1540 [new locus tag: SA_RS08670 ]
  • symbol: SA1540
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1760212..1760676
  • length: 465
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGACAACAATTAACCCAACAAACTACACATTATTAAAGAAACAAGCAGCAAGCCTTATT
    GAAGATGAACATCATATGATTGCGATTTTAAGTAACATGTCTGCCTTATTAAATGATAAT
    CTAAATCAAATTAATTGGGTTGGCTTTTACTTATTGGAACAAAATGAACTTATACTTGGA
    CCTTTCCAAGGACACCCCGCTTGTGTCCACATTCCAATTGGAAAAGGTGTATGCGGTACA
    GCCGTTTCAGAACGTCGTACACAAGTTGTAGCTGATGTCCATCAATTCGAAGGACATATC
    GCTTGTGATGCTAATAGTAAGTCTGAGATTGTCGTTCCAATTTTCAAAGATGATAAAATT
    ATCGGCGTCTTAGATATCGATGCCCCTATAACGGATCGATTTGATGACAATGACAAAGAA
    CATCTTGAAGCAATTGTTAAAATTATTGAAAAGCAACTCGCATAA
    60
    120
    180
    240
    300
    360
    420
    465


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1540 [new locus tag: SA_RS08670 ]
  • symbol: SA1540
  • description: hypothetical protein
  • length: 154
  • theoretical pI: 4.78861
  • theoretical MW: 17095.5
  • GRAVY: -0.0279221

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Central intermediary metabolism Nitrogen fixation Nif-specific regulatory protein (TIGR01817; HMM-score: 13.9)
    Signal transduction Regulatory functions DNA interactions Nif-specific regulatory protein (TIGR01817; HMM-score: 13.9)
  • TheSEED  :
    • L-methionine (R)-S-oxide reductase (EC 1.8.4.14)
    CBSS-393130.3.peg.794  CDS_ID OB2202
  • PFAM:
    GAF (CL0161) GAF; GAF domain (PF01590; HMM-score: 47.5)
    GAF_2; GAF domain (PF13185; HMM-score: 43.6)
    and 1 more
    no clan defined DUF5499; Family of unknown function (DUF5499) (PF17603; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9939
    • Cytoplasmic Membrane Score: 0.0005
    • Cell wall & surface Score: 0.0002
    • Extracellular Score: 0.0054
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002424
    • TAT(Tat/SPI): 0.000102
    • LIPO(Sec/SPII): 0.00025
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLNQINWVGFYLLEQNELILGPFQGHPACVHIPIGKGVCGTAVSERRTQVVADVHQFEGHIACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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