PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004291000
• symbol^?: tig
• synonym:
• description^?: trigger factor

  descriptions from strain specific annotations:

  • trigger factor
  • Cell division trigger factor
  • trigger factor (prolyl isomerase)
  • Trigger factor, ppiase
  • trigger factor prolyl isomerase
  • trigger factor Tig
• strand^?: -
• coordinates^?: 4536238..4537548
• synteny block^?: BlockID0033150
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1722 (tig)
N315:
SA1499 (tig)
NCTC8325:
SAOUHSC_01779 (tig)
Newman:
NWMN_1569 (tig)
USA300_FPR3757:
SAUSA300_1622 (tig)
04-02981:
SA2981_1635 (tig)
08BA02176:
C248_1716 (tig)
11819-97:
MS7_1683 (tig)
6850:
RSAU_001534 (tig)
71193:
ST398NM01_1730
ECT-R 2:
ECTR2_1516 (tig)
ED133:
SAOV_1664 (tig)
ED98:
SAAV_1663 (tig)
HO 5096 0412:
SAEMRSA15_15860 (tig)
JH1:
SaurJH1_1767 (tig)
JH9:
SaurJH9_1733 (tig)
JKD6008:
SAA6008_01643 (tig)
JKD6159:
SAA6159_01600 (tig)
LGA251:
SARLGA251_15680 (tig)
M013:
M013TW_1689
MRSA252:
SAR1755 (tig)
MSHR1132:
SAMSHR1132_15030
MSSA476:
SAS1604 (tig)
Mu3:
SAHV_1662 (tig)
Mu50:
SAV1675 (tig)
MW2:
MW1619 (tig)
RF122:
SAB1535c (tig)
ST398:
SAPIG1730 (tig)
T0131:
SAT0131_01777
TCH60:
HMPREF0772_11475 (tig)
TW20:
SATW20_16660 (tig)
USA300_TCH1516:
USA300HOU_1667 (tig)
VC40:
SAVC_07585 (tig)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
  N315            MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
  NCTC8325        MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
  Newman          MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
  USA300_FPR3757  MTATWEKKEGNEGLLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV
                  ************************************************************
  
  COL             EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
  N315            EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
  NCTC8325        EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
  Newman          EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
  USA300_FPR3757  EALYQDAIDILLPDAYGEAIDETDIKPVAQPEVSVTQIEKGKDFIFEATVTVEPEVKLGD
                  ************************************************************
  
  COL             YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
  N315            YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
  NCTC8325        YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
  Newman          YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
  USA300_FPR3757  YKGLEIEKQETELSDDELQEAIDHSLGHLAEMVVKEDGVVENGDTVNIDFSGSVDGEEFE
                  ************************************************************
  
  COL             GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
  N315            GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
  NCTC8325        GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
  Newman          GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
  USA300_FPR3757  GGQAEGYDLEIGSGSFIPGFEEQLEGMKVDEEKDVVVTFPEEYHAEELAGKEATFKTKVN
                  ************************************************************
  
  COL             EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
  N315            EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
  NCTC8325        EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
  Newman          EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
  USA300_FPR3757  EIKFKEVPELTDEIANELDAEANTVDEYKENLRKRLAEQKATDAENVEKEEAITKATDNT
                  ************************************************************
  
  COL             TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
  N315            TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
  NCTC8325        TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
  Newman          TIDIPEAMINTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
  USA300_FPR3757  TIDIPEAMVNTELDRMVSEFAQRIQQQGLDLQTYFQISGQDETQLREQMKDDAEQRVKTN
                  ********:***************************************************
  
  COL             LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
  N315            LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
  NCTC8325        LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
  Newman          LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
  USA300_FPR3757  LTLTAIAEAEKIEATDEDIDKELEKMSKQFNISVEDIKNTLGNTDIIKNDVRIQKVIDLL
                  ************************************************************
  
  COL             RDNAKFVEGTKED
  N315            RDNAKFVEGTKED
  NCTC8325        RDNAKFVEGTKED
  Newman          RDNAKFVEGTKED
  USA300_FPR3757  RDNAKFVEGTKED
                  *************