Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004173000
- symbol?: holA
- synonym:
- description?: DNA polymerase III subunit delta
- DNA polymerase III subunit delta
- DNA polymerase III, delta subunit
- DNA-directed DNA polymerase III subunit delta
- DNA polymerase III delta subunit
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4436803..4437777
- synteny block?: BlockID0032030
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1545
08BA02176:
C248_1629 (holA)
11819-97:
MS7_1604 (holA)
6850:
RSAU_001451 (holA)
71193:
ST398NM01_1652
ECT-R 2:
ECTR2_1436 (holA)
ED133:
SAOV_1586
ED98:
SAAV_1578 (holA)
HO 5096 0412:
SAEMRSA15_15060
JH1:
SaurJH1_1679 (holA)
JH9:
SaurJH9_1644 (holA)
JKD6008:
SAA6008_01556 (holA)
JKD6159:
SAA6159_01522 (holA)
LGA251:
SARLGA251_14920
M013:
M013TW_1601
MRSA252:
SAR1664 (holA)
MSHR1132:
SAMSHR1132_14260
MSSA476:
SAS1524 (holA)
Mu3:
SAHV_1574 (holA)
Mu50:
SAV1587 (holA)
MW2:
MW1538 (holA)
RF122:
SAB1459c (holA)
ST398:
SAPIG1652 (holA)
T0131:
SAT0131_01682
TCH60:
HMPREF0772_11554 (holA)
TW20:
SATW20_15820
USA300_TCH1516:
USA300HOU_1588 (holA)
VC40:
SAVC_07190 (holA)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFF
N315 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYEKEIAPIVEETLTLPFF
NCTC8325 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFF
Newman MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFF
USA300_FPR3757 MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFF
********************************************.***************
COL SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK
N315 SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK
NCTC8325 SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK
Newman SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK
USA300_FPR3757 SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK
************************************************************
COL TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL
N315 TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL
NCTC8325 TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL
Newman TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL
USA300_FPR3757 TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL
************************************************************
COL ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL
N315 ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL
NCTC8325 ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL
Newman ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL
USA300_FPR3757 ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL
************************************************************
COL ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACA
N315 ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACA
NCTC8325 ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACA
Newman ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACA
USA300_FPR3757 ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACA
*******************************************************:****
COL ETDYKLKSSYMDKQLILELFILSL
N315 ETDYKLKSSYMDKQLILELFILSL
NCTC8325 ETDYKLKSSYMDKQLILELFILSL
Newman ETDYKLKSSYMDKQLILELFILSL
USA300_FPR3757 ETDYKLKSSYMDKQLILELFILSL
************************