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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004145000
- symbol?: ccpN
- synonym:
- description?: CBS domain-containing protein
- CBS domain-containing protein
- CBS domain pair protein
- helix-turn-helix transcriptional regulator
- Transcriptional repressor ccpN
- CBS domain protein
- pseudogene
- putative DNA-binding protein
- putative transcriptional repressor ccpN
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4414210..4414701
- synteny block?: BlockID0031750
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1522
08BA02176:
C248_1607
11819-97:
MS7_1581 (ccpN)
6850:
RSAU_001429
71193:
ST398NM01_1629
ECT-R 2:
ECTR2_1414
ED133:
SAOV_1564
ED98:
SAAV_1556
HO 5096 0412:
SAEMRSA15_14840
JH1:
SaurJH1_1656
JH9:
SaurJH9_1622
JKD6008:
SAA6008_01533
JKD6159:
SAA6159_01499
LGA251:
SARLGA251_14700 (ccpN)
M013:
M013TW_1579
MRSA252:
SAR1641
MSHR1132:
SAMSHR1132_14040
MSSA476:
SAS1502
Mu3:
SAHV_1551
Mu50:
SAV1564
MW2:
MW1516
RF122:
SAB1436c
ST398:
SAPIG1629
T0131:
SAT0131_01659
TCH60:
HMPREF0772_11576
TW20:
SATW20_15600 (ccpN)
USA300_TCH1516:
—
VC40:
SAVC_07070
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ----------------------------MNLTRATLRPDLAILTMSGFLEARPRVGYYYS
N315 MELSQRQERIIEIVKTKGPITGEQIADKLNLTRATLRPDLAILTMSGFLEARPRVGYYYS
NCTC8325 ----------------------------MNLTRATLRPDLAILTMSGFLEARPRVGYYYS
Newman ----------------------------MNLTRATLRPDLAILTMSGFLEARPRVGYYYS
USA300_FPR3757 ----------------------------MNLTRATLRPDLAILTMSGFLEARPRVGYYYS
:*******************************
COL GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
N315 GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
NCTC8325 GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
Newman GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
USA300_FPR3757 GKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGV
************************************************************
COL CSRKDLLRASMIGADIHKVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
N315 CSRKDLLRASMIGADIHTVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
NCTC8325 CSRKDLLRASMIGADIHKVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
Newman CSRKDLLRASMIGADIHKVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
USA300_FPR3757 CSRKDLLRASMIGADIHKVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRK
*****************.******************************************
COL KDNQKYEVIGRISKTTIAKLLVALYKE
N315 KDNQKYEVIGRISKTTIAKLLVALYKE
NCTC8325 KDNQKYEVIGRISKTTIAKLLVALYKE
Newman KDNQKYEVIGRISKTTIAKLLVALYKE
USA300_FPR3757 KDNQKYEVIGRISKTTIAKLLVALYKE
***************************